This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1uuf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 9 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1uuf.jpg|left|200px]]
 
-
<!--
+
==crystal structure of a zinc-type alcohol dehydrogenase-like protein yahK==
-
The line below this paragraph, containing "STRUCTURE_1uuf", creates the "Structure Box" on the page.
+
<StructureSection load='1uuf' size='340' side='right'caption='[[1uuf]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1uuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UUF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1uuf| PDB=1uuf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uuf OCA], [https://pdbe.org/1uuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uuf RCSB], [https://www.ebi.ac.uk/pdbsum/1uuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uuf ProSAT], [https://www.topsan.org/Proteins/BIGS/1uuf TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''CRYSTAL STRUCTURE OF A ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN YAHK'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YAHK_ECOLI YAHK_ECOLI] Catalyzes the reduction of a wide range of aldehydes into their corresponding alcohols. Has a strong preference for NADPH over NADH as the electron donor. Cannot use a ketone as substrate. Is a major source of NADPH-dependent aldehyde reductase activity in E.coli. The in vivo functions of YahK has yet to be determined.<ref>PMID:23093176</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1UUF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UUF OCA].
+
Check<jmol>
-
[[Category: Escherichia coli]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uu/1uuf_consurf.spt"</scriptWhenChecked>
-
[[Category: Abergel, C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Claverie, J M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: IGS-CNRS, France BIGSBacterial targets at.]]
+
</jmolCheckbox>
-
[[Category: Jeudy, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uuf ConSurf].
-
[[Category: Bacterial targets at igs-cnr]]
+
<div style="clear:both"></div>
-
[[Category: Big]]
+
== References ==
-
[[Category: France]]
+
<references/>
-
[[Category: Metal-binding]]
+
__TOC__
-
[[Category: Oxydoreductase]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Zinc binding]]
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 11:42:26 2008''
+
[[Category: Abergel C]]
 +
[[Category: Claverie JM]]
 +
[[Category: Jeudy S]]

Current revision

crystal structure of a zinc-type alcohol dehydrogenase-like protein yahK

PDB ID 1uuf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools