9hxx
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9hxx is ON HOLD Authors: Smyth, P., Williams, L.J., Hough, M.A., Worrall, J.A.R., Owen, R.L. Description: DtpB in complex with photocaged nitric ox...) |
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- | '''Unreleased structure''' | ||
- | + | ==DtpB in complex with photocaged nitric oxide, 100 microsecond, 30 microjoule, SFX== | |
+ | <StructureSection load='9hxx' size='340' side='right'caption='[[9hxx]], [[Resolution|resolution]] 1.52Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[9hxx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_lividans_1326 Streptomyces lividans 1326]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HXX FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.52Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9hxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hxx OCA], [https://pdbe.org/9hxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hxx RCSB], [https://www.ebi.ac.uk/pdbsum/9hxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hxx ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A7U9HFU5_STRLI A0A7U9HFU5_STRLI] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Time-resolved X-ray crystallography is undergoing a renaissance due to the development of serial crystallography at synchrotron and XFEL beamlines. Crucial to such experiments are efficient and effective methods for uniformly initiating time-dependent processes within microcrystals, such as ligand binding, enzymatic reactions or signalling. A widely applicable approach is the use of photocaged substrates, where the photocage is soaked into the crystal in advance and then activated using a laser pulse to provide uniform initiation of the reaction throughout the crystal. This work characterizes photocage release of nitric oxide and binding of this ligand to two heme protein systems, cytochrome c'-beta and dye-decolourizing peroxidase B using a fixed target sample delivery system. Laser parameters for photoactivation are systematically explored, and time-resolved structures over timescales ranging from 100 micros to 1.4 s using synchrotron and XFEL beamlines are described. The effective use of this photocage for time-resolved crystallography is demonstrated and appropriate illumination conditions for such experiments are determined. | ||
- | + | Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide.,Smyth P, Jaho S, Williams LJ, Karras G, Fitzpatrick A, Thompson AJ, Battah S, Axford D, Horrell S, Lucic M, Ishihara K, Kataoka M, Matsuura H, Shimba K, Tono K, Tosha T, Sugimoto H, Owada S, Hough MA, Worrall JAR, Owen RL IUCrJ. 2025 Sep 1;12(Pt 5):582-594. doi: 10.1107/S2052252525006645. PMID:40843530<ref>PMID:40843530</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 9hxx" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: Worrall | + | </StructureSection> |
+ | [[Category: Large Structures]] | ||
+ | [[Category: Streptomyces lividans 1326]] | ||
+ | [[Category: Hough MA]] | ||
+ | [[Category: Owen RL]] | ||
+ | [[Category: Smyth P]] | ||
+ | [[Category: Williams LJ]] | ||
+ | [[Category: Worrall JAR]] |
Current revision
DtpB in complex with photocaged nitric oxide, 100 microsecond, 30 microjoule, SFX
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