This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1uw1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 9 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1uw1.jpg|left|200px]]
 
-
<!--
+
==A Novel ADP- and Zinc-binding fold from function-directed in vitro evolution==
-
The line below this paragraph, containing "STRUCTURE_1uw1", creates the "Structure Box" on the page.
+
<StructureSection load='1uw1' size='340' side='right'caption='[[1uw1]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1uw1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UW1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UW1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1uw1| PDB=1uw1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uw1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uw1 OCA], [https://pdbe.org/1uw1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uw1 RCSB], [https://www.ebi.ac.uk/pdbsum/1uw1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uw1 ProSAT]</span></td></tr>
-
 
+
</table>
-
'''A NOVEL ADP- AND ZINC-BINDING FOLD FROM FUNCTION-DIRECTED IN VITRO EVOLUTION'''
+
<div style="background-color:#fffaf0;">
-
 
+
== Publication Abstract from PubMed ==
-
 
+
-
==Overview==
+
A great challenge to biologists is to create proteins with novel folds and tailored functions. As an alternative to de novo protein design, we investigated the structure of a randomly generated protein targeted to bind ATP. The crystal structure reveals a novel alpha/beta fold bound to its ligand, representing both the first protein structure derived from in vitro evolution and the first nucleotide-binding protein stabilized by a zinc ion.
A great challenge to biologists is to create proteins with novel folds and tailored functions. As an alternative to de novo protein design, we investigated the structure of a randomly generated protein targeted to bind ATP. The crystal structure reveals a novel alpha/beta fold bound to its ligand, representing both the first protein structure derived from in vitro evolution and the first nucleotide-binding protein stabilized by a zinc ion.
-
==About this Structure==
+
A novel ADP- and zinc-binding fold from function-directed in vitro evolution.,Lo Surdo P, Walsh MA, Sollazzo M Nat Struct Mol Biol. 2004 Apr;11(4):382-3. Epub 2004 Mar 14. PMID:15024384<ref>PMID:15024384</ref>
-
1UW1 is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UW1 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
A novel ADP- and zinc-binding fold from function-directed in vitro evolution., Lo Surdo P, Walsh MA, Sollazzo M, Nat Struct Mol Biol. 2004 Apr;11(4):382-3. Epub 2004 Mar 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15024384 15024384]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 1uw1" style="background-color:#fffaf0;"></div>
-
[[Category: Sollazzo, M.]]
+
== References ==
-
[[Category: Surdo, P Lo.]]
+
<references/>
-
[[Category: Walsh, M A.]]
+
__TOC__
-
[[Category: In vitro evolution]]
+
</StructureSection>
-
[[Category: Nucleotide binding protein]]
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 11:45:38 2008''
+
[[Category: Synthetic construct]]
 +
[[Category: Lo Surdo P]]
 +
[[Category: Sollazzo M]]
 +
[[Category: Walsh MA]]

Current revision

A Novel ADP- and Zinc-binding fold from function-directed in vitro evolution

PDB ID 1uw1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools