1ygu

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(New page: 200px<br /> <applet load="1ygu" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ygu, resolution 2.90&Aring;" /> '''Crystal structure o...)
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[[Image:1ygu.gif|left|200px]]<br />
 
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<applet load="1ygu" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ygu, resolution 2.90&Aring;" />
 
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'''Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide'''<br />
 
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==Overview==
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==Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide==
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CD45 is the prototypic member of transmembrane receptor-like protein, tyrosine phosphatases (RPTPs) and has essential roles in immune functions., The cytoplasmic region of CD45, like many other RPTPs, contains two, homologous protein tyrosine phosphatase domains, active domain 1 (D1) and, catalytically impaired domain 2 (D2). Here, we report crystal structure of, the cytoplasmic D1D2 segment of human CD45 in native and phosphotyrosyl, peptide-bound forms. The tertiary structures of D1 and D2 are very, similar, but doubly phosphorylated CD3zeta immunoreceptor tyrosine-based, activation motif peptide binds only the D1 active site. The D2 "active, site" deviates from the other active sites significantly to the extent, that excludes any possibility of catalytic activity. The relative, orientation of D1 and D2 is very similar to that observed in leukocyte, common antigen-related protein with both active sites in an open, conformation and is restrained through an extensive network of hydrophobic, interactions, hydrogen bonds, and salt bridges. This crystal structure is, incompatible with the wedge model previously suggested for CD45, regulation.
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<StructureSection load='1ygu' size='340' side='right'caption='[[1ygu]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ygu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Murine_polyomavirus_strain_A2 Murine polyomavirus strain A2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YGU FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ygu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygu OCA], [https://pdbe.org/1ygu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ygu RCSB], [https://www.ebi.ac.uk/pdbsum/1ygu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygu ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/PTPRC_HUMAN PTPRC_HUMAN] T-B+ severe combined immunodeficiency due to CD45 deficiency. The disease is caused by mutations affecting the gene represented in this entry. Disease susceptibility may be associated with variations affecting the gene represented in this entry.
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== Function ==
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[https://www.uniprot.org/uniprot/PTPRC_HUMAN PTPRC_HUMAN] Protein tyrosine-protein phosphatase required for T-cell activation through the antigen receptor. Acts as a positive regulator of T-cell coactivation upon binding to DPP4. The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one. Upon T-cell activation, recruits and dephosphorylates SKAP1 and FYN. Dephosphorylates LYN, and thereby modulates LYN activity (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/1ygu_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ygu ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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CD45 is the prototypic member of transmembrane receptor-like protein tyrosine phosphatases (RPTPs) and has essential roles in immune functions. The cytoplasmic region of CD45, like many other RPTPs, contains two homologous protein tyrosine phosphatase domains, active domain 1 (D1) and catalytically impaired domain 2 (D2). Here, we report crystal structure of the cytoplasmic D1D2 segment of human CD45 in native and phosphotyrosyl peptide-bound forms. The tertiary structures of D1 and D2 are very similar, but doubly phosphorylated CD3zeta immunoreceptor tyrosine-based activation motif peptide binds only the D1 active site. The D2 "active site" deviates from the other active sites significantly to the extent that excludes any possibility of catalytic activity. The relative orientation of D1 and D2 is very similar to that observed in leukocyte common antigen-related protein with both active sites in an open conformation and is restrained through an extensive network of hydrophobic interactions, hydrogen bonds, and salt bridges. This crystal structure is incompatible with the wedge model previously suggested for CD45 regulation.
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==Disease==
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Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45.,Nam HJ, Poy F, Saito H, Frederick CA J Exp Med. 2005 Feb 7;201(3):441-52. Epub 2005 Jan 31. PMID:15684325<ref>PMID:15684325</ref>
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Known diseases associated with this structure: Hepatitic C virus, susceptibility to OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=151460 151460]], Multiple sclerosis, susceptibility to OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=151460 151460]], Severe combined immunodeficiency due to PTPRC deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=151460 151460]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1YGU is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Active as [http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YGU OCA].
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</div>
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<div class="pdbe-citations 1ygu" style="background-color:#fffaf0;"></div>
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==Reference==
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== References ==
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Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45., Nam HJ, Poy F, Saito H, Frederick CA, J Exp Med. 2005 Feb 7;201(3):441-52. Epub 2005 Jan 31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15684325 15684325]
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Protein complex]]
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[[Category: Large Structures]]
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[[Category: Protein-tyrosine-phosphatase]]
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[[Category: Murine polyomavirus strain A2]]
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[[Category: Frederick, C.A.]]
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[[Category: Frederick CA]]
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[[Category: Nam, H.]]
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[[Category: Nam H]]
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[[Category: Poy, F.]]
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[[Category: Poy F]]
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[[Category: Saito, H.]]
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[[Category: Saito H]]
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[[Category: cd45]]
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[[Category: phosphotyrosine]]
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[[Category: polyoma middle t antigen]]
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[[Category: protein tyrosine phosphatase]]
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[[Category: rptp]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 20:19:35 2007''
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Current revision

Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide

PDB ID 1ygu

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