9nww

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(New page: '''Unreleased structure''' The entry 9nww is ON HOLD Authors: Zinkle, A.P., Bunuro-Batista, M., Herrera, C.M., Erramilli, S.K., Kloss, B., Ashraf, K.U., Nosol, K., Zhang, G., Cater, R.J...)
Current revision (13:04, 17 December 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9nww is ON HOLD
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==Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state==
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<StructureSection load='9nww' size='340' side='right'caption='[[9nww]], [[Resolution|resolution]] 3.58&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9nww]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9NWW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9NWW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.58&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KDL:(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-5-oxidanyl-oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic+acid'>KDL</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9nww FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9nww OCA], [https://pdbe.org/9nww PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9nww RCSB], [https://www.ebi.ac.uk/pdbsum/9nww PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9nww ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MCR1_ECOLX MCR1_ECOLX] Probably catalyzes the addition of a phosphoethanolamine moiety to lipid A. Phosphoethanolamine modification of lipid A gives polymyxin resistance (PubMed:26603172).<ref>PMID:26603172</ref> Confers resistance to polymyxin-type antibiotics; expression of the Mcr-1 protein in E.coli increases colistin and polymyxin B minimal inhibitory concentration (MIC) from 0.5 mg/ml to 2.0 mg/ml. The pHNSHP45 plasmid can transfer efficiently (0.1 to 0.001) to other E.coli strains by conjugation and increases polymxin MIC by 8- to 16-fold; it may not require selective pressure to be maintained in the cell. When transformed into K.pneumoniae or P.aeruginosa it also increases polymxin MIC 8- to 16-fold. In a murine (BALB/c mice) thigh infection study using an mcr1-encoding plasmid isolated from a human patient, the plasmid confers in vivo protection against colistin (PubMed:26603172).<ref>PMID:26603172</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Polymyxins are used to treat infections caused by multidrug-resistant Gram-negative bacteria. They are cationic peptides that target the negatively charged lipid A component of lipopolysaccharides, disrupting the outer membrane and lysing the cell. Polymyxin resistance is conferred by inner-membrane enzymes, such as phosphoethanolamine transferases, which add positively charged phosphoethanolamine to lipid A. Here, we present the structure of MCR-1, a plasmid-encoded phosphoethanolamine transferase, in its liganded form. The phosphatidylethanolamine donor substrate is bound near the active site in the periplasmic domain, and lipid A is bound over 20 A away, within the transmembrane region. Integrating structural, biochemical, and drug-resistance data with computational analyses, we propose a two-state model in which the periplasmic domain rotates to bring the active site to lipid A, near the preferential phosphate modification site for MCR-1. This enzymatic mechanism may be generally applicable to other phosphoform transferases with large, globular soluble domains.
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Authors: Zinkle, A.P., Bunuro-Batista, M., Herrera, C.M., Erramilli, S.K., Kloss, B., Ashraf, K.U., Nosol, K., Zhang, G., Cater, R.J., Marty, M.T., Kossiakoff, A.A., Trent, M.S., Nygaard, R., Stansfeld, P.J., Mancia, F.
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Mechanistic basis of antimicrobial resistance mediated by the phosphoethanolamine transferase MCR-1.,Zinkle AP, Batista MB, Herrera CM, Erramilli SK, Kloss B, Ashraf KU, Nosol K, Zhang G, Cater RJ, Marty MT, Kossiakoff AA, Trent MS, Nygaard R, Stansfeld PJ, Mancia F Nat Commun. 2025 Nov 26;16(1):10516. doi: 10.1038/s41467-025-65515-3. PMID:41298376<ref>PMID:41298376</ref>
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Description: Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nosol, K]]
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<div class="pdbe-citations 9nww" style="background-color:#fffaf0;"></div>
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[[Category: Zinkle, A.P]]
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== References ==
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[[Category: Herrera, C.M]]
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<references/>
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[[Category: Bunuro-Batista, M]]
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__TOC__
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[[Category: Erramilli, S.K]]
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</StructureSection>
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[[Category: Marty, M.T]]
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[[Category: Escherichia coli]]
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[[Category: Mancia, F]]
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[[Category: Homo sapiens]]
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[[Category: Kossiakoff, A.A]]
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[[Category: Large Structures]]
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[[Category: Trent, M.S]]
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[[Category: Ashraf KU]]
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[[Category: Cater, R.J]]
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[[Category: Bunuro-Batista M]]
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[[Category: Zhang, G]]
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[[Category: Cater RJ]]
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[[Category: Nygaard, R]]
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[[Category: Erramilli SK]]
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[[Category: Stansfeld, P.J]]
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[[Category: Herrera CM]]
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[[Category: Ashraf, K.U]]
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[[Category: Kloss B]]
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[[Category: Kloss, B]]
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[[Category: Kossiakoff AA]]
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[[Category: Mancia F]]
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[[Category: Marty MT]]
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[[Category: Nosol K]]
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[[Category: Nygaard R]]
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[[Category: Stansfeld PJ]]
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[[Category: Trent MS]]
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[[Category: Zhang G]]
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[[Category: Zinkle AP]]

Current revision

Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state

PDB ID 9nww

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