User:David Bogle/Sandbox 2
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< User:David Bogle(Difference between revisions)
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| - | == Scenes == | + | == Scenes == <StructureSection> |
| - | <scene name='10/1076054/Iccg_disulfide_bridge/ | + | |
| - | <scene name='10/1076054/Thermostability_wild_type/ | + | <scene name='10/1076054/Iccg_disulfide_bridge/4'>Disulfide Bridge white</scene> |
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| + | <scene name='10/1076054/Iccg_disulfide_bridge/6'>Disulfide Bridge blue</scene> | ||
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| + | <scene name='10/1076054/Thermostability_wild_type/5'>D238 and S283</scene> | ||
== Text == | == Text == | ||
| - | Main Article<ref>PMID:32269349</ref> | + | Main Article<ref name="main">PMID:32269349</ref> |
| - | PET Recycling<ref>DOI: 10.1016/j.jece.2024.112507</ref> | + | PET Recycling<ref name="recycle">Babaei, M., Jalilian, M., & Shahbaz, K. (2024). Chemical recycling of Polyethylene terephthalate: A mini-review. Journal of Environmental Chemical Engineering, 12(3), 112507. [https://doi.org/10.1016/j.jece.2024.112507. DOI: 10.1016/j.jece.2024.112507]</ref> |
| - | LCC identification <ref>PMID:22194294</ref> | + | LCC identification <ref name="LCC">PMID:22194294</ref> |
| - | Engineering PET Hydrolases <ref>DOI: 10.1016/j.csbj.2023.06.004</ref> | + | Engineering PET Hydrolases <ref name="Hydrolases">Jayasekara, S. K., Joni, H. D., Jayantha, B., Dissanayake, L., Mandrell, C., Sinharage, M. M. S., Molitor, R., Jayasekara, T., Sivakumar, P., & Jayakody, L. N. (2023). Trends in in-silico guided engineering of efficient polyethylene terephthalate (PET) hydrolyzing enzymes to enable bio-recycling and upcycling of PET. Computational and structural biotechnology journal, 21, 3513–3521. [https://doi.org/10.1016/j.csbj.2023.06.004 DOI: 10.1016/j.csbj.2023.06.004]</ref> |
| - | PET Mechanism <ref>DOI: 10.1016/j.polymer.2009.10.018</ref> | + | PET Mechanism <ref name="mechanism">Han, X., Liu, W., Huang, J. W., et al. (2017). Structural insight into catalytic mechanism of PET hydrolase. Nature Communications, 8, 2106. https://doi.org/10.1038/s41467-017-02255-z.Heredia-Guerrero, J. A., Heredia, A., García-Segura, R., & Benítez, J. J. (2009). Synthesis and characterization of a plant cutin mimetic polymer. Polymer, 50(24), 5633–5637. [https://doi.org/10.1016/j.polymer.2009.10.018 DOI: 10.1016/j.polymer.2009.10.018]</ref> |
| - | Biodegradation of PET <ref>DOI: 10.15252/embr.201949826</ref> | + | Biodegradation of PET <ref name="biodegradation">Hiraga, K., Taniguchi, I., Yoshida, S., Kimura, Y., & Oda, K. (2019). Biodegradation of waste PET: A sustainable solution for dealing with plastic pollution. EMBO Reports, 20(11), e49365. https://doi.org/10.15252/embr.201949365. [Published correction appears in EMBO Reports, 21(2), e49826. [https://doi.org/10.15252/embr.201949826. DOI: 10.15252/embr.201949826]</ref> |
| - | Mechanism of PET Degradation <ref>PMID:29374183</ref> | + | Mechanism of PET Degradation <ref name="breakdown">PMID:29374183</ref> |
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| + | PET Degradation by TF <ref name="TF">PMID:24728714</ref> | ||
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| + | Dr.K <ref name="substrate">A binding model of the substrate 2-HE(MHET)3 in wild-type LLC (4eb0.pdb) was constructed and refined to mimic the 3D structure illustrated in Figure 2 of reference “1”. The software Maestro (Schrödinger, Inc; version 14.2.118) was used to construct the initial binding structure, followed by energy minimization in the context of the rigid protein that had previously been processed to add/refine all hydrogen atoms. The ligand model was then used without further modification to identify and illustrate the cited active-site residues.</ref> | ||
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| + | <ref group="xtra">PMID:15068885</ref> | ||
| - | PET Degradation by TF <ref>DOI: 10.1007/s00253-014-5672-0</ref> | ||
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<references /> | <references /> | ||
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| + | ===Additional Literature and Resources=== | ||
| + | <references group="xtra"/> | ||
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| + | ====PDB Files==== | ||
| + | PDB Files | ||
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| + | Wild Type LCC: [https://www.rcsb.org/structure/4EB0 4EB0] | ||
| + | Mutant ICCG: [https://www.rcsb.org/structure/6THT 6THT] | ||
Current revision
== Scenes ==
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