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- | [[Image:1zmq.gif|left|200px]]<br /> | |
- | <applet load="1zmq" size="450" color="white" frame="true" align="right" spinBox="true" | |
- | caption="1zmq, resolution 2.10Å" /> | |
- | '''Crystal structure of human alpha-defensin-6'''<br /> | |
| | | |
- | ==Overview== | + | ==Crystal structure of human alpha-defensin-6== |
- | Six alpha-defensins have been found in humans. These small arginine-rich, peptides play important roles in various processes related to host, defense, being the effectors and regulators of innate immunity as well as, enhancers of adoptive immune responses. Four defensins, called neutrophil, peptides 1 through 4, are stored primarily in polymorphonuclear, leukocytes. Major sites of expression of defensins 5 and 6 are Paneth, cells of human small intestine. So far, only one structure of human, alpha-defensin (HNP3) has been reported, and the properties of the, intestine defensins 5 and 6 are particularly poorly understood. In this, report, we present the high-resolution X-ray structures of three human, defensins, 4 through 6, supplemented with studies of their antimicrobial, and chemotactic properties. Despite only modest amino acid sequence, identity, all three defensins share their tertiary structures with other, known alpha- and beta-defensins. Like HNP3 but in contrast to murine or, rabbit alpha-defensins, human defensins 4-6 form characteristic dimers., Whereas antimicrobial and chemotactic activity of HNP4 is somewhat, comparable to that of other human neutrophil defensins, neither of the, intestinal defensins appears to be chemotactic, and for HD6 also an, antimicrobial activity has yet to be observed. The unusual biological, inactivity of HD6 may be associated with its structural properties, somewhat standing out when compared with other human alpha-defensins. The, strongest cationic properties and unique distribution of charged residues, on the molecular surface of HD5 may be associated with its highest, bactericidal activity among human alpha-defensins. | + | <StructureSection load='1zmq' size='340' side='right'caption='[[1zmq]], [[Resolution|resolution]] 2.10Å' scene=''> |
| + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[1zmq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZMQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZMQ FirstGlance]. <br> |
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zmq OCA], [https://pdbe.org/1zmq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zmq RCSB], [https://www.ebi.ac.uk/pdbsum/1zmq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zmq ProSAT]</span></td></tr> |
| + | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/DEF6_HUMAN DEF6_HUMAN] Has very low antimicrobial activity against Gram-negative and Gram-positive bacteria. May protect cells against infection with HIV-1.<ref>PMID:15616305</ref> <ref>PMID:17088326</ref> |
| + | <div style="background-color:#fffaf0;"> |
| + | == Publication Abstract from PubMed == |
| + | Six alpha-defensins have been found in humans. These small arginine-rich peptides play important roles in various processes related to host defense, being the effectors and regulators of innate immunity as well as enhancers of adoptive immune responses. Four defensins, called neutrophil peptides 1 through 4, are stored primarily in polymorphonuclear leukocytes. Major sites of expression of defensins 5 and 6 are Paneth cells of human small intestine. So far, only one structure of human alpha-defensin (HNP3) has been reported, and the properties of the intestine defensins 5 and 6 are particularly poorly understood. In this report, we present the high-resolution X-ray structures of three human defensins, 4 through 6, supplemented with studies of their antimicrobial and chemotactic properties. Despite only modest amino acid sequence identity, all three defensins share their tertiary structures with other known alpha- and beta-defensins. Like HNP3 but in contrast to murine or rabbit alpha-defensins, human defensins 4-6 form characteristic dimers. Whereas antimicrobial and chemotactic activity of HNP4 is somewhat comparable to that of other human neutrophil defensins, neither of the intestinal defensins appears to be chemotactic, and for HD6 also an antimicrobial activity has yet to be observed. The unusual biological inactivity of HD6 may be associated with its structural properties, somewhat standing out when compared with other human alpha-defensins. The strongest cationic properties and unique distribution of charged residues on the molecular surface of HD5 may be associated with its highest bactericidal activity among human alpha-defensins. |
| | | |
- | ==About this Structure==
| + | Crystal structures of human alpha-defensins HNP4, HD5, and HD6.,Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:17088326<ref>PMID:17088326</ref> |
- | 1ZMQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CL as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ZMQ OCA].
| + | |
| | | |
- | ==Reference==
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
- | Crystal structures of human alpha-defensins HNP4, HD5, and HD6., Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J, Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17088326 17088326]
| + | </div> |
- | [[Category: Homo sapiens]]
| + | <div class="pdbe-citations 1zmq" style="background-color:#fffaf0;"></div> |
- | [[Category: Single protein]]
| + | |
- | [[Category: Lu, W.]]
| + | |
- | [[Category: Lubkowski, J.]]
| + | |
- | [[Category: Szyk, A.]]
| + | |
- | [[Category: CL]]
| + | |
- | [[Category: antimicrobial]]
| + | |
- | [[Category: human intestinal alpha-defensin]]
| + | |
- | [[Category: paneth cells defensin]]
| + | |
| | | |
- | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 20:37:20 2007''
| + | ==See Also== |
| + | *[[Defensin 3D structures|Defensin 3D structures]] |
| + | == References == |
| + | <references/> |
| + | __TOC__ |
| + | </StructureSection> |
| + | [[Category: Homo sapiens]] |
| + | [[Category: Large Structures]] |
| + | [[Category: Lu W]] |
| + | [[Category: Lubkowski J]] |
| + | [[Category: Szyk A]] |
| Structural highlights
Function
DEF6_HUMAN Has very low antimicrobial activity against Gram-negative and Gram-positive bacteria. May protect cells against infection with HIV-1.[1] [2]
Publication Abstract from PubMed
Six alpha-defensins have been found in humans. These small arginine-rich peptides play important roles in various processes related to host defense, being the effectors and regulators of innate immunity as well as enhancers of adoptive immune responses. Four defensins, called neutrophil peptides 1 through 4, are stored primarily in polymorphonuclear leukocytes. Major sites of expression of defensins 5 and 6 are Paneth cells of human small intestine. So far, only one structure of human alpha-defensin (HNP3) has been reported, and the properties of the intestine defensins 5 and 6 are particularly poorly understood. In this report, we present the high-resolution X-ray structures of three human defensins, 4 through 6, supplemented with studies of their antimicrobial and chemotactic properties. Despite only modest amino acid sequence identity, all three defensins share their tertiary structures with other known alpha- and beta-defensins. Like HNP3 but in contrast to murine or rabbit alpha-defensins, human defensins 4-6 form characteristic dimers. Whereas antimicrobial and chemotactic activity of HNP4 is somewhat comparable to that of other human neutrophil defensins, neither of the intestinal defensins appears to be chemotactic, and for HD6 also an antimicrobial activity has yet to be observed. The unusual biological inactivity of HD6 may be associated with its structural properties, somewhat standing out when compared with other human alpha-defensins. The strongest cationic properties and unique distribution of charged residues on the molecular surface of HD5 may be associated with its highest bactericidal activity among human alpha-defensins.
Crystal structures of human alpha-defensins HNP4, HD5, and HD6.,Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:17088326[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ericksen B, Wu Z, Lu W, Lehrer RI. Antibacterial activity and specificity of the six human {alpha}-defensins. Antimicrob Agents Chemother. 2005 Jan;49(1):269-75. PMID:15616305 doi:10.1128/AAC.49.1.269-275.2005
- ↑ Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J. Crystal structures of human alpha-defensins HNP4, HD5, and HD6. Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:17088326 doi:ps.062336606
- ↑ Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J. Crystal structures of human alpha-defensins HNP4, HD5, and HD6. Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:17088326 doi:ps.062336606
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