This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wd7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 25 October 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wd7.gif|left|200px]]
 
-
<!--
+
==Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)==
-
The line below this paragraph, containing "STRUCTURE_1wd7", creates the "Structure Box" on the page.
+
<StructureSection load='1wd7' size='340' side='right'caption='[[1wd7]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wd7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WD7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WD7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wd7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wd7 OCA], [https://pdbe.org/1wd7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wd7 RCSB], [https://www.ebi.ac.uk/pdbsum/1wd7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wd7 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wd7 TOPSAN]</span></td></tr>
-
{{STRUCTURE_1wd7| PDB=1wd7 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)'''
+
[https://www.uniprot.org/uniprot/Q5SKH2_THET8 Q5SKH2_THET8]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WD7 OCA].
+
<jmolCheckbox>
-
[[Category: Uroporphyrinogen-III synthase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wd7_consurf.spt"</scriptWhenChecked>
-
[[Category: Kuramitsu, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Matsuura, T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Mizohata, E.]]
+
</jmolCheckbox>
-
[[Category: Murayama, K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wd7 ConSurf].
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<div style="clear:both"></div>
-
[[Category: Sakai, H.]]
+
__TOC__
-
[[Category: Shirouzu, M.]]
+
</StructureSection>
-
[[Category: Terada, T.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Thermus thermophilus]]
-
[[Category: Congenital erythropoietic porphyria]]
+
[[Category: Kuramitsu S]]
-
[[Category: Heme]]
+
[[Category: Matsuura T]]
-
[[Category: Porphyrin]]
+
[[Category: Mizohata E]]
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Murayama K]]
-
[[Category: Rsgi]]
+
[[Category: Sakai H]]
-
[[Category: Structural genomic]]
+
[[Category: Shirouzu M]]
-
[[Category: Uroporphyrinogen]]
+
[[Category: Terada T]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 13:29:42 2008''
+
[[Category: Yokoyama S]]

Current revision

Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)

PDB ID 1wd7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools