9vdn

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Current revision (10:53, 3 September 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9vdn is ON HOLD until Paper Publication
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==Cryo-EM structure of human ATP9A (AlF) E2P state open form==
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<StructureSection load='9vdn' size='340' side='right'caption='[[9vdn]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
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Authors: Abe, K.
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9vdn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9VDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9VDN FirstGlance]. <br>
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Description: Cryo-EM structure of human ATP9A (AlF) E2P state open form
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.61&#8491;</td></tr>
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[[Category: Unreleased Structures]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=P5S:O-[(R)-{[(2R)-2,3-BIS(OCTADECANOYLOXY)PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE'>P5S</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene></td></tr>
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[[Category: Abe, K]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9vdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9vdn OCA], [https://pdbe.org/9vdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9vdn RCSB], [https://www.ebi.ac.uk/pdbsum/9vdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9vdn ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/ATP9A_HUMAN ATP9A_HUMAN] Non-specific syndromic intellectual disability. The disease is caused by variants affecting the gene represented in this entry.
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== Function ==
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[https://www.uniprot.org/uniprot/ATP9A_HUMAN ATP9A_HUMAN] Plays a role in regulating membrane trafficking of cargo proteins, namely endosome to plasma membrane recycling, probably acting through RAB5 and RAB11 activation (PubMed:27733620, PubMed:30213940, PubMed:36604604). Also involved in endosome to trans-Golgi network retrograde transport (PubMed:27733620, PubMed:30213940). In complex with MON2 and DOP1B, regulates SNX3 retromer-mediated endosomal sorting of WLS, a transporter of Wnt morphogens in developing tissues. Participates in the formation of endosomal carriers that direct WLS trafficking back to Golgi, away from lysosomal degradation (PubMed:30213940). Appears to be implicated in intercellular communication by negatively regulating the release of exosomes (PubMed:30947313). The flippase activity towards membrane lipids and its role in membrane asymmetry remains to be proved (PubMed:30947313). Required for the maintenance of neurite morphology and synaptic transmission (By similarity).[UniProtKB:O70228]<ref>PMID:27733620</ref> <ref>PMID:30213940</ref> <ref>PMID:30947313</ref> <ref>PMID:36604604</ref>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Abe K]]

Current revision

Cryo-EM structure of human ATP9A (AlF) E2P state open form

PDB ID 9vdn

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