We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Sandbox Home

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(Removing all content from page)
Current revision (16:37, 30 September 2025) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
 +
<!-- Flexbox wrapper for logo and introductory text -->
 +
<div style="display: flex; align-items: flex-start; margin-bottom: 1em;">
 +
<div style="margin-right: 20px;">
 +
<!-- Proteopedia Logo image/tag, e.g.: -->
 +
<img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">
 +
</div>
 +
<div>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
 +
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
 +
</span>
 +
<br>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em; max-width:80%; display:block;">
 +
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
 +
</div>
 +
</div>
 +
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse:collapse;table-layout:fixed;">
 +
<tr>
 +
<td colspan="3" style="background:#F5F5FC;border:1px solid #ddd;vertical-align:top;">
 +
<div style="top:.2em;font-size:1.2em;padding:5px 5px 5px 10px;float:right;">
 +
'''''ISSN 2310-6301'''''
 +
</div>
 +
</td>
 +
</tr>
 +
 +
<tr>
 +
<th style="padding:10px; background-color:#33ff7b;">Selected Research Pages</th>
 +
<th style="padding:10px; background-color:#f1b840;">In Journals</th>
 +
<th style="padding:10px; background-color:#79baff;">Education</th>
 +
</tr>
 +
 +
<tr valign="top">
 +
<td style="padding:5px;">{{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
 +
<td style="padding:5px;">{{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
 +
<td style="padding:5px;">{{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
 +
</tr>
 +
 +
<tr style="font-size:1.2em;text-align:center;">
 +
<td style="padding:10px; background-color:#33ff7b;"></td>
 +
<td style="padding:10px; background-color:#f1b840;"></td>
 +
<td style="padding:10px; background-color:#79baff;"></td>
 +
</tr>
 +
 +
<tr style="font-size:1em;text-align:center;">
 +
<td style="padding:10px;">
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
 +
<p>[[Who knows]] ...</p>
 +
</td>
 +
<td style="padding:10px;">
 +
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
 +
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
 +
<p>[[How to get an I3DC for your paper]]</p>
 +
</td>
 +
<td style="padding:10px;">
 +
<p>[[Teaching strategies using Proteopedia]]</p>
 +
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
</td>
 +
</tr>
 +
 +
<tr>
 +
<td colspan="3">
 +
<table width="100%" style="padding:10px; background-color:#d7d8f9; font-size:1.5em;">
 +
<tr>
 +
<td>[[Proteopedia:About|About]]</td>
 +
<td>[[Special:Contact|Contact]]</td>
 +
<td>[[Template:MainPageNews|Hot News]]</td>
 +
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
 +
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
 +
<td>[[Help:Contents|Help]]</td>
 +
</tr>
 +
</table>
 +
</td>
 +
</tr>
 +
</table>

Current revision

   <img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">

   
     As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
   
   

   
     Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.
   

       ISSN 2310-6301
Selected Research Pages In Journals Education
About this image
Coronavirus Spike Protein Membrane Fusion

by Eric Martz
SARS-CoV-2 spike protein "spears" the host membrane with a fusion peptide and drags the virus envelope membrane transmembrane domain close to the host membrane, initiating fusion. This moves the virus RNA genome into the host cell, initiating infection.
>>> Visit this page >>>

About this image
Geobacter pili: surprising function.

Y Gu, V Srikanth, AI Salazar-Morales, R Jain, JP O'Brien, SM Yi, RK Soni, FA Samatey, SE Yalcin, NS Malvankar. Nature 2021 doi: 10.1038/s41586-021-03857-w
Geobacter pili were long thought to be electrically conductive protein nanowires composed of PilA-N. Nanowires are crucial to the energy metabolism of bacteria flourishing in oxygen-deprived environments. To everyone's surprise, in 2019, the long-studied nanowires were found to be linear polymers of multi-heme cytochromes, not pili. The first cryo-EM structure of pili (2021) reveals a filament made of dimers of PilA-N and PilA-C, shown. Electrical conductivity of pili is much lower than that of cytochrome nanowires. Evidence suggests that PilA-NC filaments are periplasmic pseudopili crucial for exporting cytochrome nanowires onto the cell surface, rather than the pili serving as nanowires themselves.

>>> Visit I3DC Interactive Visualizations >>>

About this image
Tutorial: Ramachandran Plot Inspection

by Angel Herráez
Side-by-side display of dihedral angles in a 3D model of a tripeptide and its Ramachandran plot. Users can interact with any of them and the other will change accordingly. Includes animated rotations with display of clashes.

>>> Visit this page >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia
About Contact Hot News Table of Contents Structure Index Help
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Home"
Personal tools