Sandbox Home

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:37, 30 September 2025) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
+
<!-- Flexbox wrapper for logo and introductory text -->
-
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
+
<div style="display: flex; align-items: flex-start; margin-bottom: 1em;">
-
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
+
<div style="margin-right: 20px;">
 +
<!-- Proteopedia Logo image/tag, e.g.: -->
 +
<img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">
 +
</div>
 +
<div>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
 +
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
 +
</span>
 +
<br>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em; max-width:80%; display:block;">
 +
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
 +
</div>
 +
</div>
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
+
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse:collapse;table-layout:fixed;">
-
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
+
<tr>
-
</span>
+
<td colspan="3" style="background:#F5F5FC;border:1px solid #ddd;vertical-align:top;">
 +
<div style="top:.2em;font-size:1.2em;padding:5px 5px 5px 10px;float:right;">
 +
'''''ISSN 2310-6301'''''
 +
</div>
 +
</td>
 +
</tr>
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em;max-width:80%;display:block;">
+
<tr>
-
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
+
<th style="padding:10px; background-color:#33ff7b;">Selected Research Pages</th>
-
</span>
+
<th style="padding:10px; background-color:#f1b840;">In Journals</th>
 +
<th style="padding:10px; background-color:#79baff;">Education</th>
 +
</tr>
 +
<tr valign="top">
 +
<td style="padding:5px;">{{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
 +
<td style="padding:5px;">{{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
 +
<td style="padding:5px;">{{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
 +
</tr>
-
</td></tr>
+
<tr style="font-size:1.2em;text-align:center;">
 +
<td style="padding:10px; background-color:#33ff7b;"></td>
 +
<td style="padding:10px; background-color:#f1b840;"></td>
 +
<td style="padding:10px; background-color:#79baff;"></td>
 +
</tr>
-
<tr>
+
<tr style="font-size:1em;text-align:center;">
-
<th style="padding: 10px;background-color: #33ff7b">Selected Research Pages</th>
+
<td style="padding:10px;">
-
<th style="padding: 10px;background-color: #f1b840">In Journals</th>
+
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
-
<th style="padding: 10px;background-color: #79baff">Education</th>
+
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
-
</tr>
+
<p>[[Who knows]] ...</p>
 +
</td>
 +
<td style="padding:10px;">
 +
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
 +
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
 +
<p>[[How to get an I3DC for your paper]]</p>
 +
</td>
 +
<td style="padding:10px;">
 +
<p>[[Teaching strategies using Proteopedia]]</p>
 +
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
</td>
 +
</tr>
-
<tr valign='top'>
+
<tr>
-
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
+
<td colspan="3">
-
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
+
<table width="100%" style="padding:10px; background-color:#d7d8f9; font-size:1.5em;">
-
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
+
<tr>
-
</tr>
+
<td>[[Proteopedia:About|About]]</td>
-
 
+
<td>[[Special:Contact|Contact]]</td>
-
<tr style="font-size: 1.2em; text-align: center;">
+
<td>[[Template:MainPageNews|Hot News]]</td>
-
<td style="padding: 10px;background-color: #33ff7b"></td>
+
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
-
<td style="padding: 10px;background-color: #f1b840"></td>
+
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
-
<td style="padding: 10px;background-color: #79baff"></td>
+
<td>[[Help:Contents|Help]]</td>
-
</tr>
+
</tr>
-
 
+
</table>
-
 
+
</td>
-
<tr style="font-size: 1.0em; text-align: center;">
+
</tr>
-
 
+
-
<td style="padding: 10px;>
+
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
-
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
+
-
<p>[[Who knows]] ...</p>
+
-
</td>
+
-
 
+
-
<td style="padding: 10px;>
+
-
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
+
-
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
+
-
<p>[[How to get an I3DC for your paper]]</p>
+
-
 
+
-
</td>
+
-
 
+
-
<td style="padding: 10px;>
+
-
<p>[[Teaching strategies using Proteopedia]]</p>
+
-
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
+
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
-
</td>
+
-
 
+
-
</tr>
+
-
 
+
-
<tr><td colspan='3' >
+
-
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
+
-
<td>[[Proteopedia:About|About]]</td>
+
-
<td>[[Special:Contact|Contact]]</td>
+
-
<td>[[Template:MainPageNews|Hot News]]</td>
+
-
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
+
-
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
+
-
<td>[[Help:Contents|Help]]</td>
+
-
</tr></table>
+
-
</td></tr>
+
</table>
</table>

Current revision

   <img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">

   
     As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
   
   

   
     Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.
   

       ISSN 2310-6301
Selected Research Pages In Journals Education
About this image
Mutations in Coronavirus Spike Protein

by Eric Martz
Black spots are mutations of concern in SARS-CoV-2 spike protein reported by UK scientists in December, 2020. RNA viruses mutate quickly so mutations are expected. These mutations may speed up contagion, but are unlikely to cause more severe COVID-19 and unlikely to reduce vaccine effectiveness. ACE2 binding residues. Animation shows priming via cleavage by furin.
>>> Visit this page >>>

About this image
Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica.

H Matsunami, YH Yoon, VA Meshcheryakov, K Namba, FA Samatey. Scientific Reports 2016 doi: 10.1038/srep27399
A periplasmic flagellar chaperone protein, FlgA, is required for P-ring assembly in bacterial flagella of taxa such as Salmonella enterica or Escherichia coli. Here we present the open and closed crystal structures of FlgA from Salmonella enterica serovar Typhimurium, grown under different crystallization conditions. An intramolecular disulfide cross-linked form of FlgA caused a dominant negative effect on motility of the wild-type strain.

>>> Visit this I3DC complement >>>

About this image
Make Your Own Electrostatic Potential Maps

Positive (+) and Negative (-) charges on the surface of a protein molecule play crucial roles in its interactions with other molecules, and hence in its functions. Electrostatic potential maps coloring the surface of a protein molecule are a popular way to visualize the distribution of surface charges. Easy to use free software is available to to create these surface maps. Above is an integral membrane potassium channel protein. One of its 4 identical chains is removed so you can see the Negative (-) protein surface contacting the 3 K+ ions.

>>> See Examples and Get Instructions >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia
About Contact Hot News Table of Contents Structure Index Help
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Home"
Personal tools