2a66

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(New page: 200px<br /> <applet load="2a66" size="450" color="white" frame="true" align="right" spinBox="true" caption="2a66, resolution 2.20&Aring;" /> '''Human Liver Recepto...)
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[[Image:2a66.gif|left|200px]]<br />
 
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<applet load="2a66" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2a66, resolution 2.20&Aring;" />
 
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'''Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter'''<br />
 
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==Overview==
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==Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter==
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The DNA-binding and ligand-binding functions of nuclear receptors are, localized to independent domains separated by a flexible hinge. The, DNA-binding domain (DBD) of the human liver receptor homologue-1 (hLRH-1), which controls genes central to development and metabolic homeostasis, interacts with monomeric DNA response elements and contains an Ftz-F1, motif that is unique to the NR5A nuclear receptor subfamily. Here, we, present the 2.2A resolution crystal structure of the hLRH-1 DBD in complex, with duplex DNA, and elucidate the sequence-specific DNA contacts, essential for the ability of LRH-1 to bind to DNA as a monomer. We show, that the unique Ftz-F1 domain folds into a novel helix that packs against, the DBD but does not contact DNA. Mutations expected to disrupt the, positioning of the Ftz-F1 helix do not eliminate DNA binding but reduce, the transcriptional activity of full-length LRH-1 significantly. Moreover, we find that altering the Ftz-F1 helix positioning eliminates the, enhancement of LRH-1-mediated transcription by the coactivator GRIP1, an, action that is associated primarily with the distantly located, ligand-binding domain (LBD). Taken together, these results indicate that, subtle structural changes in a nuclear receptor DBD can exert long-range, functional effects on the LBD of a receptor, and significantly impact, transcriptional regulation.
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<StructureSection load='2a66' size='340' side='right'caption='[[2a66]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2a66]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A66 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A66 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a66 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a66 OCA], [https://pdbe.org/2a66 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a66 RCSB], [https://www.ebi.ac.uk/pdbsum/2a66 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a66 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NR5A2_HUMAN NR5A2_HUMAN] Binds to the sequence element 5'-AACGACCGACCTTGAG-3' of the enhancer II of hepatitis B virus genes, a critical cis-element of their expression and regulation. May be responsible for the liver-specific activity of enhancer II, probably in combination with other hepatocyte transcription factors. Key regulator of cholesterol 7-alpha-hydroxylase gene (CYP7A) expression in liver. May also contribute to the regulation of pancreas-specific genes and play important roles in embryonic development.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a6/2a66_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a66 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The DNA-binding and ligand-binding functions of nuclear receptors are localized to independent domains separated by a flexible hinge. The DNA-binding domain (DBD) of the human liver receptor homologue-1 (hLRH-1), which controls genes central to development and metabolic homeostasis, interacts with monomeric DNA response elements and contains an Ftz-F1 motif that is unique to the NR5A nuclear receptor subfamily. Here, we present the 2.2A resolution crystal structure of the hLRH-1 DBD in complex with duplex DNA, and elucidate the sequence-specific DNA contacts essential for the ability of LRH-1 to bind to DNA as a monomer. We show that the unique Ftz-F1 domain folds into a novel helix that packs against the DBD but does not contact DNA. Mutations expected to disrupt the positioning of the Ftz-F1 helix do not eliminate DNA binding but reduce the transcriptional activity of full-length LRH-1 significantly. Moreover, we find that altering the Ftz-F1 helix positioning eliminates the enhancement of LRH-1-mediated transcription by the coactivator GRIP1, an action that is associated primarily with the distantly located ligand-binding domain (LBD). Taken together, these results indicate that subtle structural changes in a nuclear receptor DBD can exert long-range functional effects on the LBD of a receptor, and significantly impact transcriptional regulation.
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==About this Structure==
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Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity.,Solomon IH, Hager JM, Safi R, McDonnell DP, Redinbo MR, Ortlund EA J Mol Biol. 2005 Dec 16;354(5):1091-102. Epub 2005 Oct 27. PMID:16289203<ref>PMID:16289203</ref>
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2A66 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with ZN and ACT as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2A66 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity., Solomon IH, Hager JM, Safi R, McDonnell DP, Redinbo MR, Ortlund EA, J Mol Biol. 2005 Dec 16;354(5):1091-102. Epub 2005 Oct 27. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16289203 16289203]
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</div>
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[[Category: Homo sapiens]]
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<div class="pdbe-citations 2a66" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Hager, J.M.]]
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[[Category: McDonnell, D.P.]]
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[[Category: Ortlund, E.A.]]
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[[Category: Redinbo, M.R.]]
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[[Category: Safi, R.]]
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[[Category: Solomon, I.H.]]
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[[Category: ACT]]
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[[Category: ZN]]
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[[Category: c-terminal extension]]
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[[Category: dna-binding domain]]
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[[Category: ftz-f1]]
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[[Category: nuclear receptor]]
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[[Category: protein-dna complex]]
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[[Category: transcription factor]]
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[[Category: zinc finger]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 20:46:43 2007''
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==See Also==
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*[[Liver receptor homolog-1|Liver receptor homolog-1]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Hager JM]]
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[[Category: McDonnell DP]]
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[[Category: Ortlund EA]]
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[[Category: Redinbo MR]]
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[[Category: Safi R]]
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[[Category: Solomon IH]]

Current revision

Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter

PDB ID 2a66

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