1xgy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:39, 21 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xgy.gif|left|200px]]
 
-
<!--
+
==Crystal Structure of Anti-Meta I Rhodopsin Fab Fragment K42-41L==
-
The line below this paragraph, containing "STRUCTURE_1xgy", creates the "Structure Box" on the page.
+
<StructureSection load='1xgy' size='340' side='right'caption='[[1xgy]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xgy]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XGY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.71&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xgy OCA], [https://pdbe.org/1xgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xgy RCSB], [https://www.ebi.ac.uk/pdbsum/1xgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xgy ProSAT]</span></td></tr>
-
{{STRUCTURE_1xgy| PDB=1xgy | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6PF95_MOUSE Q6PF95_MOUSE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xg/1xgy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xgy ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Rhodopsin is a G-protein-coupled receptor (GPCR) that is the light detector in the rod cells of the eye. Rhodopsin is the best understood member of the large GPCR superfamily and is the only GPCR for which atomic resolution structures have been determined. However, these structures are for the inactive, dark-adapted form. Characterization of the conformational changes in rhodopsin caused by light-induced activation is of wide importance, because the metarhodopsin-II photoproduct is analogous to the agonist-occupied conformation of other GPCRs, and metarhodopsin-I may be similar to antagonist-occupied GPCR conformations. In this work we characterize the interaction of antibody K42-41L with the metarhodopsin photoproducts. K42-41L is shown to inhibit formation of metarhodopsin-II while it stabilizes the metarhodopsin-I state. Thus, K42-41L recognizes an epitope accessible in dark-adapted rhodopsin and metarhodopsin-I that is lost upon formation of metarhodopsin-II. Previous work has shown that the peptide TGALQERSK is able to mimic the K42-41L epitope, and we have now determined the structure of the K42-41L-peptide complex. The structure demonstrates a central role for elements of the rhodopsin C3 loop, particularly Gln238 and Glu239, in the interaction with K42-41L. Geometric constraints taken from the antibody-bound peptide were used to model the epitope on the rhodopsin surface. The resulting model suggests that K42-41L locks the C3 loop into an extended conformation that is intermediate between two compact conformations seen in crystal structures of dark-adapted rhodopsin. Together, the structural and functional data strongly suggest that the equilibrium between metarhodopsin-I and metarhodopsin-II is dependent upon the conformation of the C3 loop. The biological implications of this model and its possible relations to dimeric and multimeric complexes of rhodopsin are discussed.
-
'''Crystal Structure of Anti-Meta I Rhodopsin Fab Fragment K42-41L'''
+
Equilibrium between metarhodopsin-I and metarhodopsin-II is dependent on the conformation of the third cytoplasmic loop.,Piscitelli CL, Angel TE, Bailey BW, Hargrave P, Dratz EA, Lawrence CM J Biol Chem. 2006 Mar 10;281(10):6813-25. Epub 2005 Dec 29. PMID:16407202<ref>PMID:16407202</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1xgy" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XGY OCA].
+
*[[Antibody 3D structures|Antibody 3D structures]]
-
[[Category: Angel, T.]]
+
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
-
[[Category: Bailey, B.]]
+
== References ==
-
[[Category: Lawerence, C M.]]
+
<references/>
-
[[Category: Piscitelli, C L.]]
+
__TOC__
-
[[Category: Antibody]]
+
</StructureSection>
-
[[Category: Antibody imprinting]]
+
[[Category: Large Structures]]
-
[[Category: Fab]]
+
[[Category: Mus musculus]]
-
[[Category: Igg]]
+
[[Category: Angel TE]]
-
[[Category: Immunoglobulin]]
+
[[Category: Bailey BW]]
-
[[Category: K42-41l]]
+
[[Category: Lawerence CM]]
-
[[Category: Meta-i]]
+
[[Category: Piscitelli CL]]
-
[[Category: Peptide mimetic]]
+
-
[[Category: Phage display]]
+
-
[[Category: Rhodopsin]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 15:00:51 2008''
+

Current revision

Crystal Structure of Anti-Meta I Rhodopsin Fab Fragment K42-41L

PDB ID 1xgy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools