1y27

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:51, 23 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y27.gif|left|200px]]
 
-
<!--
+
==G-riboswitch-guanine complex==
-
The line below this paragraph, containing "STRUCTURE_1y27", creates the "Structure Box" on the page.
+
<StructureSection load='1y27' size='340' side='right'caption='[[1y27]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1y27]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. The October 2010 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Riboswitches'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2010_10 10.2210/rcsb_pdb/mom_2010_10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y27 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y27 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GUN:GUANINE'>GUN</scene></td></tr>
-
{{STRUCTURE_1y27| PDB=1y27 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y27 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y27 OCA], [https://pdbe.org/1y27 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y27 RCSB], [https://www.ebi.ac.uk/pdbsum/1y27 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y27 ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Metabolite-sensing mRNAs, or "riboswitches," specifically interact with small ligands and direct expression of the genes involved in their metabolism. Riboswitches contain sensing "aptamer" modules, capable of ligand-induced structural changes, and downstream regions, harboring expression-controlling elements. We report the crystal structures of the add A-riboswitch and xpt G-riboswitch aptamer modules that distinguish between bound adenine and guanine with exquisite specificity and modulate expression of two different sets of genes. The riboswitches form tuning fork-like architectures, in which the prongs are held in parallel through hairpin loop interactions, and the internal bubble zippers up to form the purine binding pocket. The bound purines are held by hydrogen bonding interactions involving conserved nucleotides along their entire periphery. Recognition specificity is associated with Watson-Crick pairing of the encapsulated adenine and guanine ligands with uridine and cytosine, respectively.
-
'''G-riboswitch-guanine complex'''
+
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs.,Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ Chem Biol. 2004 Dec;11(12):1729-41. PMID:15610857<ref>PMID:15610857</ref>
-
 
+
-
 
+
-
==Overview==
+
-
Metabolite-sensing mRNAs, or "riboswitches," specifically interact with small ligands and direct expression of the genes involved in their metabolism. Riboswitches contain sensing "aptamer" modules, capable of ligand-induced structural changes, and downstream regions, harboring expression-controlling elements. We report the crystal structures of the add A-riboswitch and xpt G-riboswitch aptamer modules that distinguish between bound adenine and guanine with exquisite specificity and modulate expression of two different sets of genes. The riboswitches form tuning fork-like architectures, in which the prongs are held in parallel through hairpin loop interactions, and the internal bubble zippers up to form the purine binding pocket. The bound purines are held by hydrogen bonding interactions involving conserved nucleotides along their entire periphery. Recognition specificity is associated with Watson-Crick pairing of the encapsulated adenine and guanine ligands with uridine and cytosine, respectively.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y27 OCA].
+
</div>
 +
<div class="pdbe-citations 1y27" style="background-color:#fffaf0;"></div>
-
==Reference==
+
==See Also==
-
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs., Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ, Chem Biol. 2004 Dec;11(12):1729-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15610857 15610857]
+
*[[Riboswitch 3D structures|Riboswitch 3D structures]]
-
[[Category: Patel, D J.]]
+
== References ==
-
[[Category: Serganov, A.]]
+
<references/>
-
[[Category: Yuan, Y R.]]
+
__TOC__
-
[[Category: Crystal structure]]
+
</StructureSection>
-
[[Category: G-riboswitch guanine recognition]]
+
[[Category: Bacillus subtilis]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 15:47:39 2008''
+
[[Category: Large Structures]]
 +
[[Category: RCSB PDB Molecule of the Month]]
 +
[[Category: Riboswitches]]
 +
[[Category: Patel DJ]]
 +
[[Category: Serganov A]]
 +
[[Category: Yuan YR]]

Current revision

G-riboswitch-guanine complex

PDB ID 1y27

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y27"
Personal tools