This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yb2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:01, 15 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yb2.gif|left|200px]]
 
-
<!--
+
==Structure of a putative methyltransferase from Thermoplasma acidophilum.==
-
The line below this paragraph, containing "STRUCTURE_1yb2", creates the "Structure Box" on the page.
+
<StructureSection load='1yb2' size='340' side='right'caption='[[1yb2]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1yb2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YB2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YB2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1yb2| PDB=1yb2 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yb2 OCA], [https://pdbe.org/1yb2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yb2 RCSB], [https://www.ebi.ac.uk/pdbsum/1yb2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yb2 ProSAT], [https://www.topsan.org/Proteins/MCSG/1yb2 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Structure of a putative methyltransferase from Thermoplasma acidophilum.'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9HJW1_THEAC Q9HJW1_THEAC]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1YB2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YB2 OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Thermoplasma acidophilum dsm 1728]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1yb2_consurf.spt"</scriptWhenChecked>
-
[[Category: Cuff, M E.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yb2 ConSurf].
-
[[Category: Sanishvili, R.]]
+
<div style="clear:both"></div>
-
[[Category: Savchenko, A.]]
+
__TOC__
-
[[Category: Xu, X.]]
+
</StructureSection>
-
[[Category: Mcsg]]
+
[[Category: Large Structures]]
-
[[Category: Methyltransferase]]
+
[[Category: Thermoplasma acidophilum DSM 1728]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Cuff ME]]
-
[[Category: Protein structure initiative]]
+
[[Category: Edwards A]]
-
[[Category: Psi]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Sanishvili R]]
-
[[Category: Thermoplasma acidophilum]]
+
[[Category: Savchenko A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:05:49 2008''
+
[[Category: Xu X]]

Current revision

Structure of a putative methyltransferase from Thermoplasma acidophilum.

PDB ID 1yb2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yb2"
Personal tools