This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ybf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 15 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ybf.gif|left|200px]]
 
-
<!--
+
==Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482==
-
The line below this paragraph, containing "STRUCTURE_1ybf", creates the "Structure Box" on the page.
+
<StructureSection load='1ybf' size='340' side='right'caption='[[1ybf]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ybf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1ybf| PDB=1ybf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybf OCA], [https://pdbe.org/1ybf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybf RCSB], [https://www.ebi.ac.uk/pdbsum/1ybf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ybf TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q7MVU1_PORGI Q7MVU1_PORGI]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBF OCA].
+
Check<jmol>
-
[[Category: Burley, S K.]]
+
<jmolCheckbox>
-
[[Category: Krishnamurthy, N R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybf_consurf.spt"</scriptWhenChecked>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Swaminathan, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Amp nucleosidase]]
+
</jmolCheckbox>
-
[[Category: Bacteroides thetaiotaomicron]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybf ConSurf].
-
[[Category: New york structural genomix research consortium]]
+
<div style="clear:both"></div>
-
[[Category: Nysgxrc]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi]]
+
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: T1840]]
+
[[Category: Burley SK]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:06:40 2008''
+
[[Category: Krishnamurthy NR]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482

PDB ID 1ybf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ybf"
Personal tools