This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ybz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:56, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ybz.gif|left|200px]]
 
-
<!--
+
==Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001==
-
The line below this paragraph, containing "STRUCTURE_1ybz", creates the "Structure Box" on the page.
+
<StructureSection load='1ybz' size='340' side='right'caption='[[1ybz]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ybz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
{{STRUCTURE_1ybz| PDB=1ybz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybz OCA], [https://pdbe.org/1ybz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybz RCSB], [https://www.ebi.ac.uk/pdbsum/1ybz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybz ProSAT], [https://www.topsan.org/Proteins/SECSG/1ybz TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8U098_PYRFU Q8U098_PYRFU]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1YBZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBZ OCA].
+
Check<jmol>
-
[[Category: Chorismate mutase]]
+
<jmolCheckbox>
-
[[Category: Pyrococcus furiosus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybz_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Adams, M W.W.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bridger, S.]]
+
</jmolCheckbox>
-
[[Category: Chang, S H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybz ConSurf].
-
[[Category: Chen, L.]]
+
<div style="clear:both"></div>
-
[[Category: Dillard, B D.]]
+
__TOC__
-
[[Category: Eneh, J C.]]
+
</StructureSection>
-
[[Category: Habel, J.]]
+
[[Category: Large Structures]]
-
[[Category: Hopkins, R C.]]
+
-
[[Category: II, F L.Poole.]]
+
-
[[Category: Jr., F E.Jenney.]]
+
-
[[Category: Kelley, L L.C.]]
+
-
[[Category: Lee, D.]]
+
-
[[Category: Lee, H S.]]
+
-
[[Category: Li, T.]]
+
-
[[Category: Lin, D.]]
+
-
[[Category: Liu, Z J.]]
+
-
[[Category: Nguyen, D.]]
+
-
[[Category: Praissman, J.]]
+
-
[[Category: Rose, J P.]]
+
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
-
[[Category: Shah, C.]]
+
-
[[Category: Sugar, F J.]]
+
-
[[Category: Tempel, W.]]
+
-
[[Category: Wang, B C.]]
+
-
[[Category: Zhang, H.]]
+
-
[[Category: Zhou, W.]]
+
-
[[Category: Conserved hypothetical protein]]
+
-
[[Category: Hyperthermophile]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Secsg]]
+
[[Category: Adams MWW]]
-
[[Category: Southeast collaboratory for structural genomic]]
+
[[Category: Bridger S]]
-
[[Category: Structural genomic]]
+
[[Category: Chang S-H]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:07:48 2008''
+
[[Category: Chen L]]
 +
[[Category: Dillard BD]]
 +
[[Category: Eneh JC]]
 +
[[Category: Habel J]]
 +
[[Category: Hopkins RC]]
 +
[[Category: Jenney Jr FE]]
 +
[[Category: Kelley L-LC]]
 +
[[Category: Lee D]]
 +
[[Category: Lee H-S]]
 +
[[Category: Li T]]
 +
[[Category: Lin D]]
 +
[[Category: Liu Z-J]]
 +
[[Category: Nguyen D]]
 +
[[Category: Poole II FL]]
 +
[[Category: Praissman J]]
 +
[[Category: Rose JP]]
 +
[[Category: Shah C]]
 +
[[Category: Sugar FJ]]
 +
[[Category: Tempel W]]
 +
[[Category: Wang B-C]]
 +
[[Category: Zhang H]]
 +
[[Category: Zhou W]]

Current revision

Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001

PDB ID 1ybz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools