This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2aca

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:16, 15 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2aca.gif|left|200px]]
 
-
<!--
+
==X-ray structure of a putative adenylate cyclase Q87NV8 from Vibrio parahaemolyticus at the 2.25 A resolution. Northeast Structural Genomics Target VpR19.==
-
The line below this paragraph, containing "STRUCTURE_2aca", creates the "Structure Box" on the page.
+
<StructureSection load='2aca' size='340' side='right'caption='[[2aca]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2aca]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ACA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ACA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_2aca| PDB=2aca | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2aca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aca OCA], [https://pdbe.org/2aca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2aca RCSB], [https://www.ebi.ac.uk/pdbsum/2aca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2aca ProSAT], [https://www.topsan.org/Proteins/NESGC/2aca TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''X-ray structure of a putative adenylate cyclase Q87NV8 from Vibrio parahaemolyticus at the 2.25 A resolution. Northeast Structural Genomics Target VpR19.'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q87NV8_VIBPA Q87NV8_VIBPA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2ACA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ACA OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ac/2aca_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2aca ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vibrio parahaemolyticus]]
[[Category: Vibrio parahaemolyticus]]
-
[[Category: Abashidze, M.]]
+
[[Category: Abashidze M]]
-
[[Category: Acton, T.]]
+
[[Category: Acton T]]
-
[[Category: Chen, Y.]]
+
[[Category: Chen Y]]
-
[[Category: Conover, K.]]
+
[[Category: Conover K]]
-
[[Category: Cunningham, K E.]]
+
[[Category: Cunningham KE]]
-
[[Category: Forouhar, F.]]
+
[[Category: Forouhar F]]
-
[[Category: Hunt, J F.]]
+
[[Category: Hunt JF]]
-
[[Category: Kuzin, A P.]]
+
[[Category: Kuzin AP]]
-
[[Category: Ma, L C.]]
+
[[Category: Ma L-C]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione GT]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Tong L]]
-
[[Category: Tong, L.]]
+
[[Category: Vorobiev SM]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Xiao R]]
-
[[Category: Xiao, R.]]
+
-
[[Category: Adenylate cyclase]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Q87nv8]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Vpr19]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 18:52:19 2008''
+

Current revision

X-ray structure of a putative adenylate cyclase Q87NV8 from Vibrio parahaemolyticus at the 2.25 A resolution. Northeast Structural Genomics Target VpR19.

PDB ID 2aca

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools