2ad6

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[[Image:2ad6.gif|left|200px]]
 
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==crystal structure of methanol dehydrogenase from M. W3A1 (form C)==
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The line below this paragraph, containing "STRUCTURE_2ad6", creates the "Structure Box" on the page.
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<StructureSection load='2ad6' size='340' side='right'caption='[[2ad6]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ad6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylophilus_methylotrophus_W3A1 Methylophilus methylotrophus W3A1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AD6 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>
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{{STRUCTURE_2ad6| PDB=2ad6 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ad6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ad6 OCA], [https://pdbe.org/2ad6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ad6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ad6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ad6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DHM1_METME DHM1_METME] Catalyzes the oxidation of primary alcohols including methanol.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ad/2ad6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ad6 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Methanol dehydrogenase is a heterotetrameric enzyme containing the prosthetic group pyrroloquinoline quinone (PQQ), which catalyzes the oxidation of methanol to formaldehyde. The crystal structure of methanol dehydrogenase from Methylophilus W3A1, previously determined at high resolution, exhibits a non-planar configuration of the PQQ ring system and lends support for a hydride transfer mechanism of the enzymatic reaction catalyzed by the enzyme. To investigate why PQQ is in the C5-reduced form and to better understand the catalytic mechanism of the enzyme, three structures of this enzyme in a new crystal form have been determined at higher resolution. Two of the three crystals were grown in the presence of 1 and 50 mM methanol, respectively, both structures of which show non-planar configurations of the PQQ ring system, confirming the previous conclusion; the other was crystallized in the presence of 50 mM ethanol, the structure of which displays a planar ring system for PQQ. Comparison of these structures reveals that the configuration change of PQQ is induced by the enzymatic reaction. The reaction takes place and the C5-reduced PQQ intermediate is produced when the enzyme co-crystallizes with methanol, but the enzymatic reaction does not take place and the PQQ ring retains a planar configuration of the oxidized orthoquinone form when ethanol instead of methanol is present in the crystallization solution.
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'''crystal structure of methanol dehydrogenase from M. W3A1 (form C)'''
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The enzymatic reaction-induced configuration change of the prosthetic group PQQ of methanol dehydrogenase.,Li J, Gan JH, Mathews FS, Xia ZX Biochem Biophys Res Commun. 2011 Mar 25;406(4):621-6. Epub 2011 Feb 26. PMID:21356200<ref>PMID:21356200</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2ad6" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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2AD6 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Methylophilus_methylotrophus_w3a1 Methylophilus methylotrophus w3a1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AD6 OCA].
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*[[Methanol dehydrogenase|Methanol dehydrogenase]]
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[[Category: Methylophilus methylotrophus w3a1]]
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== References ==
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[[Category: Protein complex]]
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<references/>
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[[Category: Gan, J H.]]
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__TOC__
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[[Category: Li, J.]]
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</StructureSection>
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[[Category: Mathews, F S.]]
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[[Category: Large Structures]]
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[[Category: Xia, Z X.]]
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[[Category: Methylophilus methylotrophus W3A1]]
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[[Category: Methanol dehydrogenase]]
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[[Category: Gan J-H]]
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[[Category: Native]]
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[[Category: Li J]]
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[[Category: Pqq configuration]]
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[[Category: Mathews FS]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 18:53:47 2008''
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[[Category: Xia Z-X]]

Current revision

crystal structure of methanol dehydrogenase from M. W3A1 (form C)

PDB ID 2ad6

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