This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2akl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:18, 15 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2akl.gif|left|200px]]
 
-
<!--
+
==Solution structure for phn-A like protein PA0128 from Pseudomonas aeruginosa==
-
The line below this paragraph, containing "STRUCTURE_2akl", creates the "Structure Box" on the page.
+
<StructureSection load='2akl' size='340' side='right'caption='[[2akl]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2akl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AKL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2akl| PDB=2akl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2akl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2akl OCA], [https://pdbe.org/2akl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2akl RCSB], [https://www.ebi.ac.uk/pdbsum/2akl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2akl ProSAT], [https://www.topsan.org/Proteins/NESGC/2akl TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Solution structure for phn-A like protein PA0128 from Pseudomonas aeruginosa'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9I704_PSEAE Q9I704_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2AKL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AKL OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/2akl_consurf.spt"</scriptWhenChecked>
-
Sequence specific resonance assignment of a hypothetical protein PA0128 from Pseudomonas aeruginosa., Srisailam S, Lukin JA, Lemak A, Yee A, Arrowsmith CH, J Biomol NMR. 2006;36 Suppl 1:27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16703420 16703420]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Pseudomonas aeruginosa]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Arrowsmith, C H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2akl ConSurf].
-
[[Category: Bansal, S.]]
+
<div style="clear:both"></div>
-
[[Category: Lemak, A.]]
+
__TOC__
-
[[Category: Lukin, J A.]]
+
</StructureSection>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: OCSP, Ontario Centre for Structural Proteomics.]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Prestegard, J H.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Srisailam, S.]]
+
[[Category: Bansal S]]
-
[[Category: Yee, A.]]
+
[[Category: Lemak A]]
-
[[Category: Beta-strand protein]]
+
[[Category: Lukin JA]]
-
[[Category: Nesg]]
+
[[Category: Prestegard JH]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Srisailam S]]
-
[[Category: Ocsp]]
+
[[Category: Yee A]]
-
[[Category: Ontario centre for structural proteomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Two domain]]
+
-
[[Category: Zn binding protein]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 19:09:54 2008''
+

Current revision

Solution structure for phn-A like protein PA0128 from Pseudomonas aeruginosa

PDB ID 2akl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools