2b5p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:33, 13 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2b5p.gif|left|200px]]
 
-
<!--
+
==Solution structure of ribbon isoform of CMrVIA lambda conotoxin==
-
The line below this paragraph, containing "STRUCTURE_2b5p", creates the "Structure Box" on the page.
+
<StructureSection load='2b5p' size='340' side='right'caption='[[2b5p]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2b5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Conus_marmoreus Conus marmoreus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B5P FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-
{{STRUCTURE_2b5p| PDB=2b5p | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b5p OCA], [https://pdbe.org/2b5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b5p RCSB], [https://www.ebi.ac.uk/pdbsum/2b5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b5p ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Solution structure of ribbon isoform of CMrVIA lambda conotoxin'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CTA6A_CONMR CTA6A_CONMR] Chi-conotoxins inhibit the neuronal noradrenaline transporter (NET/SLC6A2).[UniProtKB:P58808]
-
 
+
<div style="background-color:#fffaf0;">
-
==Overview==
+
== Publication Abstract from PubMed ==
alpha-Conotoxins possess a conserved four-cysteine framework and disulfide linkages (C(1)(-)(3), C(2)(-)(4)) that fold toward the globular conformation with absolute fidelity. Despite the presence of a similar conserved set of cysteine framework, chi/lambda-conotoxins adopt an alternate disulfide-pairing (C(1)(-)(4), C(2)(-)(3)) and its consequent ribbon conformation, exhibiting distinct biological activities from alpha-conotoxins. chi/lambda-Conotoxin CMrVIA (VCCGYKLCHOC-COOH) isolated from the venom of Conus marmoreus natively exists in the ribbon conformation and induces seizures in mice at a potency that is of three orders higher than the non-native globular form. We have chemically synthesized two isoforms of CMrVIA conotoxin in the ribbon and globular conformation and determined their structures by (1)H NMR spectroscopy. The ribbon (PDB ID 2B5P) and globular conformations (PBD ID 2B5Q) were calculated to have paired-wise backbone RMSDs of 0.48 +/- 0.1 and 0.58 +/- 0.1 A respectively. Unlike the native globular alpha-conotoxins, the globular canonical form of CMrVIA chi/lambda-conotoxin exhibited heterogeneity in its solution structure as noted by the presence of minor conformers and poorer RMSD of structure calculation. Paired-wise backbone comparison between the native ribbon and the non-native globular form of CMrVIA conotoxin revealed an RMSD of 4.73 A, emphasizing their distinct conformational differences. These structural data are essential for the understanding of the structure-function activity of chi/lambda-conotoxins, as well as unraveling the folding propensities of these short peptide toxins.
alpha-Conotoxins possess a conserved four-cysteine framework and disulfide linkages (C(1)(-)(3), C(2)(-)(4)) that fold toward the globular conformation with absolute fidelity. Despite the presence of a similar conserved set of cysteine framework, chi/lambda-conotoxins adopt an alternate disulfide-pairing (C(1)(-)(4), C(2)(-)(3)) and its consequent ribbon conformation, exhibiting distinct biological activities from alpha-conotoxins. chi/lambda-Conotoxin CMrVIA (VCCGYKLCHOC-COOH) isolated from the venom of Conus marmoreus natively exists in the ribbon conformation and induces seizures in mice at a potency that is of three orders higher than the non-native globular form. We have chemically synthesized two isoforms of CMrVIA conotoxin in the ribbon and globular conformation and determined their structures by (1)H NMR spectroscopy. The ribbon (PDB ID 2B5P) and globular conformations (PBD ID 2B5Q) were calculated to have paired-wise backbone RMSDs of 0.48 +/- 0.1 and 0.58 +/- 0.1 A respectively. Unlike the native globular alpha-conotoxins, the globular canonical form of CMrVIA chi/lambda-conotoxin exhibited heterogeneity in its solution structure as noted by the presence of minor conformers and poorer RMSD of structure calculation. Paired-wise backbone comparison between the native ribbon and the non-native globular form of CMrVIA conotoxin revealed an RMSD of 4.73 A, emphasizing their distinct conformational differences. These structural data are essential for the understanding of the structure-function activity of chi/lambda-conotoxins, as well as unraveling the folding propensities of these short peptide toxins.
-
==About this Structure==
+
Solution structures of two structural isoforms of CMrVIA chi/lambda-conotoxin.,Kang TS, Jois SD, Kini RM Biomacromolecules. 2006 Aug;7(8):2337-46. PMID:16903680<ref>PMID:16903680</ref>
-
2B5P is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B5P OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Solution structures of two structural isoforms of CMrVIA chi/lambda-conotoxin., Kang TS, Jois SD, Kini RM, Biomacromolecules. 2006 Aug;7(8):2337-46. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16903680 16903680]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 2b5p" style="background-color:#fffaf0;"></div>
-
[[Category: Jois, S D.S.]]
+
== References ==
-
[[Category: Kang, T S.]]
+
<references/>
-
[[Category: Kini, R M.]]
+
__TOC__
-
[[Category: Conotoxin]]
+
</StructureSection>
-
[[Category: Disulfide linkage]]
+
[[Category: Conus marmoreus]]
-
[[Category: Ribbon conformation]]
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 19:53:25 2008''
+
[[Category: Jois SDS]]
 +
[[Category: Kang TS]]
 +
[[Category: Kini RM]]

Current revision

Solution structure of ribbon isoform of CMrVIA lambda conotoxin

PDB ID 2b5p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools