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2dmr
From Proteopedia
(Difference between revisions)
(New page: 200px<br /> <applet load="2dmr" size="450" color="white" frame="true" align="right" spinBox="true" caption="2dmr, resolution 2.8Å" /> '''DITHIONITE REDUCED D...) |
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| - | [[Image:2dmr.gif|left|200px]]<br /> | ||
| - | <applet load="2dmr" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2dmr, resolution 2.8Å" /> | ||
| - | '''DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS'''<br /> | ||
| - | == | + | ==DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS== |
| - | + | <StructureSection load='2dmr' size='340' side='right'caption='[[2dmr]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2dmr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DMR FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>PGD</scene>, <scene name='pdbligand=SO2:SULFUR+DIOXIDE'>SO2</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dmr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dmr OCA], [https://pdbe.org/2dmr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dmr RCSB], [https://www.ebi.ac.uk/pdbsum/2dmr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dmr ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DSTOR_RHOCA DSTOR_RHOCA] Catalyzes the reduction of dimethyl sulfoxide (DMSO) and trimethylamine N-oxide (TMAO) to dimethyl sulfide (DMS) and trimethylamine, respectively. The terminal DMSO reductase can also use various sulfoxides and N-oxide compounds as terminal electron acceptor in addition to DMSO and TMAO.<ref>PMID:2001248</ref> <ref>PMID:8856102</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/2dmr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dmr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Rhodobacter capsulatus]] | [[Category: Rhodobacter capsulatus]] | ||
| - | + | [[Category: Bailey S]] | |
| - | [[Category: Bailey | + | [[Category: Mcalpine AS]] |
| - | [[Category: Mcalpine | + | |
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Current revision
DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS
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