This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2f13

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /> <applet load="2f13" size="450" color="white" frame="true" align="right" spinBox="true" caption="2f13, resolution 2.260&Aring;" /> '''Crystal Structure ...)
Current revision (08:44, 25 October 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f13.gif|left|200px]]<br />
 
-
<applet load="2f13" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2f13, resolution 2.260&Aring;" />
 
-
'''Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor'''<br />
 
-
==About this Structure==
+
==Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor==
-
2F13 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with PO4 and DYM as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Exo-alpha-sialidase Exo-alpha-sialidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.18 3.2.1.18] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2F13 OCA].
+
<StructureSection load='2f13' size='340' side='right'caption='[[2f13]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
-
[[Category: Exo-alpha-sialidase]]
+
== Structural highlights ==
-
[[Category: Homo sapiens]]
+
<table><tr><td colspan='2'>[[2f13]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F13 FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26&#8491;</td></tr>
-
[[Category: Chavas, L.M.G.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DYM:6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC+ACID'>DYM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Dyason, J.C.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f13 OCA], [https://pdbe.org/2f13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f13 RCSB], [https://www.ebi.ac.uk/pdbsum/2f13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f13 ProSAT]</span></td></tr>
-
[[Category: Fusi, P.]]
+
</table>
-
[[Category: Itzstein, M.von.]]
+
== Function ==
-
[[Category: Kato, R.]]
+
[https://www.uniprot.org/uniprot/NEUR2_HUMAN NEUR2_HUMAN] Hydrolyzes sialylated compounds.
-
[[Category: Mann, M.C.]]
+
== Evolutionary Conservation ==
-
[[Category: Monti, E.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Tettamanti, G.]]
+
Check<jmol>
-
[[Category: Thomson, R.J.]]
+
<jmolCheckbox>
-
[[Category: Tringali, C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f1/2f13_consurf.spt"</scriptWhenChecked>
-
[[Category: Venerando, B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Wakatsuki, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: DYM]]
+
</jmolCheckbox>
-
[[Category: PO4]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f13 ConSurf].
-
[[Category: drug design]]
+
<div style="clear:both"></div>
-
[[Category: influenza virus]]
+
-
[[Category: neuraminidase]]
+
-
[[Category: sialidase]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 21:58:11 2007''
+
==See Also==
 +
*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Chavas LMG]]
 +
[[Category: Dyason JC]]
 +
[[Category: Fusi P]]
 +
[[Category: Kato R]]
 +
[[Category: Mann MC]]
 +
[[Category: Monti E]]
 +
[[Category: Tettamanti G]]
 +
[[Category: Thomson RJ]]
 +
[[Category: Tringali C]]
 +
[[Category: Venerando B]]
 +
[[Category: Wakatsuki S]]
 +
[[Category: Von Itzstein M]]

Current revision

Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor

PDB ID 2f13

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools