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1ivy

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(New page: 200px<br /> <applet load="1ivy" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ivy, resolution 2.2&Aring;" /> '''PHYSIOLOGICAL DIMER ...)
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[[Image:1ivy.gif|left|200px]]<br />
 
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<applet load="1ivy" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ivy, resolution 2.2&Aring;" />
 
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'''PHYSIOLOGICAL DIMER HPP PRECURSOR'''<br />
 
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==Overview==
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==PHYSIOLOGICAL DIMER HPP PRECURSOR==
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BACKGROUND: The human 'protective protein' (HPP) forms a multi-enzyme, complex with beta-galactosidase and neuraminidase in the lysosomes, protecting these two glycosidases from degradation. In humans, deficiency, of HPP leads to the lysosomal storage disease galactosialidosis., Proteolytic cleavage of the precursor form of HPP involves removal of a 2, kDa excision peptide and results in a carboxypeptidase activity. The, physiological relevance of this activity is, as yet, unknown. RESULTS: The, crystal structure of the 108 kDa dimer of the precursor HPP has been, elucidated by making extensive use of twofold density averaging. The, monomer consists of a 'core' domain and a 'cap' domain. Comparison with, the distantly related wheat serine carboxypeptidase dimer shows that the, two ... [[http://ispc.weizmann.ac.il/pmbin/getpm?8591035 (full description)]]
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<StructureSection load='1ivy' size='340' side='right'caption='[[1ivy]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ivy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IVY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ivy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ivy OCA], [https://pdbe.org/1ivy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ivy RCSB], [https://www.ebi.ac.uk/pdbsum/1ivy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ivy ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN] Defects in CTSA are the cause of galactosialidosis (GSL) [MIM:[https://omim.org/entry/256540 256540]. A lysosomal storage disease associated with a combined deficiency of beta-galactosidase and neuraminidase, secondary to a defect in cathepsin A. All patients have clinical manifestations typical of a lysosomal disorder, such as coarse facies, cherry red spots, vertebral changes, foam cells in the bone marrow, and vacuolated lymphocytes. Three phenotypic subtypes are recognized. The early infantile form is associated with fetal hydrops, edema, ascites, visceromegaly, skeletal dysplasia, and early death. The late infantile type is characterized by hepatosplenomegaly, growth retardation, cardiac involvement, and a normal or mildly affected mental state. The juvenile/adult form is characterized by myoclonus, ataxia, angiokeratoma, mental retardation, neurologic deterioration, absence of visceromegaly, and long survival.<ref>PMID:1756715</ref> <ref>PMID:8514852</ref> <ref>PMID:8968752</ref> <ref>PMID:10944848</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN] Protective protein appears to be essential for both the activity of beta-galactosidase and neuraminidase, it associates with these enzymes and exerts a protective function necessary for their stability and activity. This protein is also a carboxypeptidase and can deamidate tachykinins.<ref>PMID:1907282</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iv/1ivy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ivy ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1IVY is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]] with NAG as [[http://en.wikipedia.org/wiki/ligand ligand]]. Active as [[http://en.wikipedia.org/wiki/ ]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.5 3.4.16.5]]. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1IVY OCA]].
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*[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]]
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*[[Cathepsin 3D structures|Cathepsin 3D structures]]
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==Reference==
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== References ==
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Three-dimensional structure of the human 'protective protein': structure of the precursor form suggests a complex activation mechanism., Rudenko G, Bonten E, d'Azzo A, Hol WG, Structure. 1995 Nov 15;3(11):1249-59. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8591035 8591035]
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Azzo, A.D.]]
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[[Category: Bonten E]]
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[[Category: Bonten, E.]]
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[[Category: D'Azzo A]]
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[[Category: Hol, W.G.J.]]
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[[Category: Hol WGJ]]
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[[Category: Rudenko, G.]]
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[[Category: Rudenko G]]
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[[Category: NAG]]
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[[Category: carboxypeptidase]]
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[[Category: glycoprotein]]
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[[Category: protective protein]]
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[[Category: serine carboxypeptidase]]
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[[Category: zymogen]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Oct 29 18:53:20 2007''
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Current revision

PHYSIOLOGICAL DIMER HPP PRECURSOR

PDB ID 1ivy

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