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2flr
From Proteopedia
(Difference between revisions)
(New page: 200px<br /> <applet load="2flr" size="450" color="white" frame="true" align="right" spinBox="true" caption="2flr, resolution 2.35Å" /> '''Novel 5-Azaindole F...) |
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| - | [[Image:2flr.gif|left|200px]]<br /> | ||
| - | <applet load="2flr" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2flr, resolution 2.35Å" /> | ||
| - | '''Novel 5-Azaindole Factor VIIa Inhibitors'''<br /> | ||
| - | == | + | ==Novel 5-Azaindole Factor VIIa Inhibitors== |
| - | The discovery and development of 5-azaindole factor VIIa inhibitors will | + | <StructureSection load='2flr' size='340' side='right'caption='[[2flr]], [[Resolution|resolution]] 2.35Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2flr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FLR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FLR FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7NH:[2-HYDROXY-3-(1H-PYRROLO[3,2-C]PYRIDIN-2-YL)-BIPHENYL-3-YLMETHYL]-UREA'>7NH</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2flb|2flb]]</div></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">F7 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), F3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Coagulation_factor_VIIa Coagulation factor VIIa], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.21 3.4.21.21] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2flr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2flr OCA], [https://pdbe.org/2flr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2flr RCSB], [https://www.ebi.ac.uk/pdbsum/2flr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2flr ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Disease == | ||
| + | [[https://www.uniprot.org/uniprot/FA7_HUMAN FA7_HUMAN]] Defects in F7 are the cause of factor VII deficiency (FA7D) [MIM:[https://omim.org/entry/227500 227500]]. A hemorrhagic disease with variable presentation. The clinical picture can be very severe, with the early occurrence of intracerebral hemorrhages or repeated hemarthroses, or, in contrast, moderate with cutaneous-mucosal hemorrhages (epistaxis, menorrhagia) or hemorrhages provoked by a surgical intervention. Finally, numerous subjects are completely asymptomatic despite very low factor VII levels.<ref>PMID:8043443</ref> <ref>PMID:2070047</ref> <ref>PMID:1634227</ref> <ref>PMID:8364544</ref> <ref>PMID:8204879</ref> <ref>PMID:7981691</ref> <ref>PMID:7974346</ref> <ref>PMID:8652821</ref> <ref>PMID:8844208</ref> <ref>PMID:8940045</ref> <ref>PMID:8883260</ref> <ref>PMID:9414278</ref> <ref>PMID:9576180</ref> <ref>PMID:9452082</ref> <ref>PMID:11091194</ref> <ref>PMID:11129332</ref> <ref>PMID:10862079</ref> <ref>PMID:12472587</ref> <ref>PMID:14717781</ref> <ref>PMID:19751712</ref> <ref>PMID:18976247</ref> <ref>PMID:19432927</ref> <ref>PMID:21206266</ref> <ref>PMID:21372693</ref> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/FA7_HUMAN FA7_HUMAN]] Initiates the extrinsic pathway of blood coagulation. Serine protease that circulates in the blood in a zymogen form. Factor VII is converted to factor VIIa by factor Xa, factor XIIa, factor IXa, or thrombin by minor proteolysis. In the presence of tissue factor and calcium ions, factor VIIa then converts factor X to factor Xa by limited proteolysis. Factor VIIa will also convert factor IX to factor IXa in the presence of tissue factor and calcium. [[https://www.uniprot.org/uniprot/TF_HUMAN TF_HUMAN]] Initiates blood coagulation by forming a complex with circulating factor VII or VIIa. The [TF:VIIa] complex activates factors IX or X by specific limited protolysis. TF plays a role in normal hemostasis by initiating the cell-surface assembly and propagation of the coagulation protease cascade.<ref>PMID:12652293</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fl/2flr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2flr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The discovery and development of 5-azaindole factor VIIa inhibitors will be described. | ||
| - | + | Novel 5-azaindole factor VIIa inhibitors.,Riggs JR, Hu H, Kolesnikov A, Leahy EM, Wesson KE, Shrader WD, Vijaykumar D, Wahl TA, Tong Z, Sprengeler PA, Green MJ, Yu C, Katz BA, Sanford E, Nguyen M, Cabuslay R, Young WB Bioorg Med Chem Lett. 2006 Jun 15;16(12):3197-200. Epub 2006 Apr 18. PMID:16621549<ref>PMID:16621549</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| + | <div class="pdbe-citations 2flr" style="background-color:#fffaf0;"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Factor VIIa 3D structures|Factor VIIa 3D structures]] | |
| + | *[[Tissue factor|Tissue factor]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Coagulation factor VIIa]] | [[Category: Coagulation factor VIIa]] | ||
| - | [[Category: | + | [[Category: Human]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Green, M | + | [[Category: Green, M J]] |
| - | [[Category: Hu, H | + | [[Category: Hu, H]] |
| - | [[Category: Katz, B | + | [[Category: Katz, B A]] |
| - | [[Category: Kolesnikov, A | + | [[Category: Kolesnikov, A]] |
| - | [[Category: Leahy, E | + | [[Category: Leahy, E M]] |
| - | [[Category: Riggs, J | + | [[Category: Riggs, J R]] |
| - | [[Category: Shrader, W | + | [[Category: Shrader, W D]] |
| - | [[Category: Sprengeler, P | + | [[Category: Sprengeler, P A]] |
| - | [[Category: Tong, Z | + | [[Category: Tong, Z]] |
| - | [[Category: Vijaykumar, D | + | [[Category: Vijaykumar, D]] |
| - | [[Category: Wahl, T | + | [[Category: Wahl, T A]] |
| - | [[Category: Wesson, K | + | [[Category: Wesson, K E]] |
| - | [[Category: Young, W | + | [[Category: Young, W B]] |
| - | [[Category: Yu, C | + | [[Category: Yu, C]] |
| - | [[Category: | + | [[Category: 5-azaindole inhibitor]] |
| - | [[Category: | + | [[Category: Hydrolase-blood clotting complex]] |
| - | [[Category: | + | [[Category: S1 site]] |
| - | [[Category: | + | [[Category: Short hydrogen bond]] |
| - | + | ||
| - | + | ||
Current revision
Novel 5-Azaindole Factor VIIa Inhibitors
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Categories: Coagulation factor VIIa | Human | Large Structures | Green, M J | Hu, H | Katz, B A | Kolesnikov, A | Leahy, E M | Riggs, J R | Shrader, W D | Sprengeler, P A | Tong, Z | Vijaykumar, D | Wahl, T A | Wesson, K E | Young, W B | Yu, C | 5-azaindole inhibitor | Hydrolase-blood clotting complex | S1 site | Short hydrogen bond

