2cwk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:44, 13 March 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cwk.gif|left|200px]]
 
-
<!--
+
==Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii==
-
The line below this paragraph, containing "STRUCTURE_2cwk", creates the "Structure Box" on the page.
+
<StructureSection load='2cwk' size='340' side='right'caption='[[2cwk]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2cwk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CWK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwk OCA], [https://pdbe.org/2cwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cwk RCSB], [https://www.ebi.ac.uk/pdbsum/2cwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cwk ProSAT], [https://www.topsan.org/Proteins/RSGI/2cwk TOPSAN]</span></td></tr>
-
{{STRUCTURE_2cwk| PDB=2cwk | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NDK_PYRHO NDK_PYRHO] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cwk ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii'''
+
==See Also==
-
 
+
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2CWK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWK OCA].
+
[[Category: Large Structures]]
-
[[Category: Nucleoside-diphosphate kinase]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: Pyrococcus horikoshii]]
+
[[Category: Kato-Murayama M]]
-
[[Category: Single protein]]
+
[[Category: Murayama K]]
-
[[Category: Kato-Murayama, M.]]
+
[[Category: Shirouzu M]]
-
[[Category: Murayama, K.]]
+
[[Category: Yokoyama S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Shirouzu, M.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 23:13:18 2008''
+

Current revision

Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii

PDB ID 2cwk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2cwk"
Personal tools