2goo

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(New page: 200px<br /> <applet load="2goo" size="450" color="white" frame="true" align="right" spinBox="true" caption="2goo, resolution 2.2&Aring;" /> '''Ternary Complex of B...)
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[[Image:2goo.gif|left|200px]]<br />
 
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<applet load="2goo" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2goo, resolution 2.2&Aring;" />
 
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'''Ternary Complex of BMP-2 bound to BMPR-Ia-ECD and ActRII-ECD'''<br />
 
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==Overview==
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==Ternary Complex of BMP-2 bound to BMPR-Ia-ECD and ActRII-ECD==
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The crystal structure of the complete signaling complex formed between, bone morphogenetic protein 2 (BMP-2) and the extracellular domains (ECDs), of its type I receptor [bone morphogenetic protein receptor type Ia, (BMPR-Ia)-ECD] and its type II receptor [activin receptor type II, (ActRII)-ECD] shows two fundamental structural constraints for receptor, assembly. First, the homodimeric BMP-2 ligand assembles two pairs of each, receptor symmetrically, where each of the receptor ECDs does not make, physical contact. Therefore, conformational communication between receptor, ECDs, if any, should be propagated through the central ligand. Second, the, type I and II receptor interfaces of the complex, when compared with those, of binary complexes such as BMP-2/BMPR Ia-ECD, BMP-7/ActRII-ECD, and, activin/ActRIIb-ECD, respectively, show there are common sets of positions, repeatedly used by both ligands and receptors. Therefore, specificity-determining amino acid differences at the receptor interfaces, should also account for the disparity in affinity of individual receptors, for different ligand subunits. We find that a specific mutation to BMP-2, increases its affinity to ActRII-ECD by 5-fold. These results together, establish that the specific signaling output is largely determined by two, variables, the ligand-receptor pair identity and the mode of cooperative, assembly of relevant receptors governed by the ligand flexibility in a, membrane-restricted manner.
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<StructureSection load='2goo' size='340' side='right'caption='[[2goo]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2goo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GOO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2goo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2goo OCA], [https://pdbe.org/2goo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2goo RCSB], [https://www.ebi.ac.uk/pdbsum/2goo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2goo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BMP2_HUMAN BMP2_HUMAN] Induces cartilage and bone formation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/2goo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2goo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structure of the complete signaling complex formed between bone morphogenetic protein 2 (BMP-2) and the extracellular domains (ECDs) of its type I receptor [bone morphogenetic protein receptor type Ia (BMPR-Ia)-ECD] and its type II receptor [activin receptor type II (ActRII)-ECD] shows two fundamental structural constraints for receptor assembly. First, the homodimeric BMP-2 ligand assembles two pairs of each receptor symmetrically, where each of the receptor ECDs does not make physical contact. Therefore, conformational communication between receptor ECDs, if any, should be propagated through the central ligand. Second, the type I and II receptor interfaces of the complex, when compared with those of binary complexes such as BMP-2/BMPR Ia-ECD, BMP-7/ActRII-ECD, and activin/ActRIIb-ECD, respectively, show there are common sets of positions repeatedly used by both ligands and receptors. Therefore, specificity-determining amino acid differences at the receptor interfaces should also account for the disparity in affinity of individual receptors for different ligand subunits. We find that a specific mutation to BMP-2 increases its affinity to ActRII-ECD by 5-fold. These results together establish that the specific signaling output is largely determined by two variables, the ligand-receptor pair identity and the mode of cooperative assembly of relevant receptors governed by the ligand flexibility in a membrane-restricted manner.
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==Disease==
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Structure of the ternary signaling complex of a TGF-beta superfamily member.,Allendorph GP, Vale WW, Choe S Proc Natl Acad Sci U S A. 2006 May 16;103(20):7643-8. Epub 2006 May 3. PMID:16672363<ref>PMID:16672363</ref>
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Known diseases associated with this structure: Cowden-like syndrome OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601299 601299]], Juvenile polyposis syndrome, infantile form OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601299 601299]], Polyposis syndrome, hereditary mixed, 2 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601299 601299]], Polyposis, juvenile intestinal OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601299 601299]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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2GOO is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with NDG as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Receptor_protein_serine/threonine_kinase Receptor protein serine/threonine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.30 2.7.11.30] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2GOO OCA].
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</div>
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<div class="pdbe-citations 2goo" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Structure of the ternary signaling complex of a TGF-beta superfamily member., Allendorph GP, Vale WW, Choe S, Proc Natl Acad Sci U S A. 2006 May 16;103(20):7643-8. Epub 2006 May 3. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16672363 16672363]
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*[[Bone morphogenetic protein 3D structures|Bone morphogenetic protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Protein complex]]
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[[Category: Allendorph GP]]
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[[Category: Receptor protein serine/threonine kinase]]
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[[Category: Choe S]]
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[[Category: Allendorph, G.P.]]
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[[Category: Choe, S.]]
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[[Category: NDG]]
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[[Category: actrii]]
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[[Category: alk-3]]
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[[Category: bmp-2]]
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[[Category: bmpr-ia]]
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[[Category: tgf-beta]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 22:20:23 2007''
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Ternary Complex of BMP-2 bound to BMPR-Ia-ECD and ActRII-ECD

PDB ID 2goo

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