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Template:STRUCTURE 2db3

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(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2db3, resolution 2.20&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=ANP...)
Current revision (13:43, 6 June 2012) (edit) (undo)
 
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{{Structure
{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2db3, resolution 2.20&Aring; (<scene name='initialview01'>initial scene</scene>)
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2db3]], [[Resolution|resolution]] 2.20&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE=
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|LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
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|LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span>
|GENE= VASA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster])
|GENE= VASA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster])
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00079 HELICc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00268 DEADc]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2db3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2db3 OCA], [http://www.ebi.ac.uk/pdbsum/2db3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2db3 RCSB], [http://www.topsan.org/Proteins/RSGI/2db3 TOPSAN]</span>
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|RELATEDENTRY=
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|FUNCTION={{GO|id=GO:0004386 | text = helicase activity}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0008026 | text = ATP-dependent helicase activity}}{{GO|id=GO:0003723 | text = RNA binding}}{{GO|id=GO:0003676 | text = nucleic acid binding}}{{GO|id=GO:0003724 | text = RNA helicase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016787 | text = hydrolase activity}}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2db3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2db3 OCA], [http://www.ebi.ac.uk/pdbsum/2db3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2db3 RCSB]</span>
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|PROCESS={{GO|id=GO:0007294 | text = germarium-derived oocyte fate determination}}{{GO|id=GO:0007293 | text = germarium-derived egg chamber formation}}{{GO|id=GO:0007316 | text = pole plasm RNA localization}}{{GO|id=GO:0046012 | text = positive regulation of oskar mRNA translation}}{{GO|id=GO:0030154 | text = cell differentiation}}{{GO|id=GO:0045727 | text = positive regulation of translation}}{{GO|id=GO:0008298 | text = intracellular mRNA localization}}{{GO|id=GO:0046843 | text = dorsal appendage formation}}{{GO|id=GO:0007275 | text = multicellular organismal development}}{{GO|id=GO:0030717 | text = karyosome formation}}{{GO|id=GO:0007314 | text = oocyte anterior/posterior axis determination}}{{GO|id=GO:0048477 | text = oogenesis}}{{GO|id=GO:0007315 | text = pole plasm assembly}}{{GO|id=GO:0048134 | text = germ-line cyst formation}}{{GO|id=GO:0046011 | text = regulation of oskar mRNA translation}}{{GO|id=GO:0006378 | text = mRNA polyadenylation}}
 +
|COMPONENT={{GO|id=GO:0018994 | text = polar granule}}
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|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014014 Ipr014014], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014021 Ipr014021], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014001 Ipr014001], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011545 Ipr011545], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000629 Ipr000629], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001650 Ipr001650]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00271 PF00271], [http://pfam.sanger.ac.uk/family?acc=PF00270 PF00270]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P09052 P09052]</span>
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|uPDB=2DB3|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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Rows = identical sequences:
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<jmol>
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<jmolButton>
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<script></script>
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<text>A [x]</text>
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<name>jmb_2db3_A</name>
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<title>toggle chain A</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>B [x]</text>
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<name>jmb_2db3_B</name>
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<title>toggle chain B</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
 +
<jmolButton>
 +
<script></script>
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<text>C [x]</text>
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<name>jmb_2db3_C</name>
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<title>toggle chain C</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
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<text>D [x]</text>
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<name>jmb_2db3_D</name>
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<title>toggle chain D</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
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<text>E [x]</text>
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<name>jmb_2db3_E</name>
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<title>toggle chain E</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
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<text>F [x]</text>
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<name>jmb_2db3_F</name>
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<title>toggle chain F</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>G [x]</text>
 +
<name>jmb_2db3_G</name>
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<title>toggle chain G</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
 +
<text>H [x]</text>
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<name>jmb_2db3_H</name>
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<title>toggle chain H</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
2db3, resolution 2.20Å ()
Ligands: ,
Gene: VASA (Drosophila melanogaster)
Activity: Adenosinetriphosphatase, with EC number 3.6.1.3
Resources: FirstGlance, OCA, PDBsum, RCSB, TOPSAN
Coordinates: save as pdb, mmCIF, xml


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