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2ddx

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[[Image:2ddx.gif|left|200px]]
 
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==Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4==
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The line below this paragraph, containing "STRUCTURE_2ddx", creates the "Structure Box" on the page.
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<StructureSection load='2ddx' size='340' side='right'caption='[[2ddx]], [[Resolution|resolution]] 0.86&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ddx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_sp._AX-4 Vibrio sp. AX-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DDX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.86&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_2ddx| PDB=2ddx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ddx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ddx OCA], [https://pdbe.org/2ddx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ddx RCSB], [https://www.ebi.ac.uk/pdbsum/2ddx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ddx ProSAT]</span></td></tr>
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</table>
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'''Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4'''
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== Function ==
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[https://www.uniprot.org/uniprot/3XYN1_VIBSX 3XYN1_VIBSX] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylobiose, xylotriose and xylotetraose. Converts beta-1,3-xylotriose into xylose and xylobiose, converts beta-1,3-xylotetraose mainly into xylotriose and xylose, converts beta-1,3-xylopentaose into xylobiose and xylotriose. Does not hydrolyze beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside.<ref>PMID:15743273</ref>
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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2DDX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_sp. Vibrio sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DDX OCA].
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Check<jmol>
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[[Category: Single protein]]
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<jmolCheckbox>
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[[Category: Vibrio sp.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/2ddx_consurf.spt"</scriptWhenChecked>
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[[Category: Sakaguchi, K.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Beta-1,3-xylanase]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Glycoside hydrolase]]
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</jmolCheckbox>
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[[Category: Tim barrel]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ddx ConSurf].
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 00:14:45 2008''
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vibrio sp. AX-4]]
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[[Category: Sakaguchi K]]

Current revision

Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4

PDB ID 2ddx

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