2dji

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[[Image:2dji.jpg|left|200px]]
 
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==Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD==
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The line below this paragraph, containing "STRUCTURE_2dji", creates the "Structure Box" on the page.
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<StructureSection load='2dji' size='340' side='right'caption='[[2dji]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2dji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aerococcus_viridans Aerococcus viridans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DJI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2dji| PDB=2dji | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dji OCA], [https://pdbe.org/2dji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dji RCSB], [https://www.ebi.ac.uk/pdbsum/2dji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dji ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A9X9K8_9LACT A9X9K8_9LACT]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2dji_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dji ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structures of pyruvate oxidase from Aerococcus viridans (AvPOX) complexed with flavin adenine dinucleotide (FAD), with FAD and thiamine diphosphate (ThDP) and with FAD and the 2-acetyl-ThDP intermediate (AcThDP) have been determined at 1.6, 1.8 and 1.9 A resolution, respectively. Each subunit of the homotetrameric AvPOX enzyme consists of three domains, as observed in other ThDP-dependent enzymes. FAD is bound within one subunit in the elongated conformation and with the flavin moiety being planar in the oxidized form, while ThDP is bound in a conserved V-conformation at the subunit-subunit interface. The structures reveal flexible regions in the active-site tunnel which may undergo conformational changes to allow the entrance of the substrates and the exit of the reaction products. Of particular interest is the role of Lys478, the side chain of which may be bent or extended depending on the stage of catalysis. The structures also provide insight into the routes for electron transfer to FAD and the involvement of active-site residues in the catalysis of pyruvate to its products.
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'''Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD'''
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The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.,Juan EC, Hoque MM, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Sekiguchi T, Takenaka A Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Nov 1;63(Pt, 11):900-7. Epub 2007 Oct 20. PMID:18007037<ref>PMID:18007037</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJI OCA].
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<div class="pdbe-citations 2dji" style="background-color:#fffaf0;"></div>
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[[Category: Pyruvate oxidase]]
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== References ==
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[[Category: Hossain, M T.]]
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<references/>
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[[Category: Imamura, S.]]
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__TOC__
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[[Category: Juan, E C.M.]]
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</StructureSection>
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[[Category: Sekiguchi, T.]]
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[[Category: Aerococcus viridans]]
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[[Category: Suzuki, K.]]
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[[Category: Large Structures]]
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[[Category: Takenaka, A.]]
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[[Category: Hossain MT]]
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[[Category: Yamamoto, T.]]
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[[Category: Imamura S]]
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[[Category: Flavoprotein]]
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[[Category: Juan ECM]]
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[[Category: Oxidoreductase]]
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[[Category: Sekiguchi T]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 00:33:20 2008''
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[[Category: Suzuki K]]
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[[Category: Takenaka A]]
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[[Category: Yamamoto T]]

Current revision

Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD

PDB ID 2dji

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