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2h9r

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(New page: 200px<br /> <applet load="2h9r" size="450" color="white" frame="true" align="right" spinBox="true" caption="2h9r" /> '''Docking and dimerization domain (D/D) of th...)
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[[Image:2h9r.gif|left|200px]]<br />
 
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<applet load="2h9r" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2h9r" />
 
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'''Docking and dimerization domain (D/D) of the regulatory subunit of the Type II-alpha cAMP-dependent protein kinase A associated with a Peptide derived from an A-kinase anchoring protein (AKAP)'''<br />
 
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==Overview==
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==Docking and dimerization domain (D/D) of the regulatory subunit of the Type II-alpha cAMP-dependent protein kinase A associated with a Peptide derived from an A-kinase anchoring protein (AKAP)==
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The specificity of intracellular signaling events is controlled, in part, by compartmentalization of protein kinases and phosphatases. The, subcellular localization of these enzymes is often maintained by protein-, protein interactions. A prototypic example is the compartmentalization of, the cAMP-dependent protein kinase (PKA) through its association with, A-kinase anchoring proteins (AKAPs). A docking and dimerization domain, (D/D) located within the first 45 residues of each regulatory (R) subunit, protomer forms a high affinity binding site for its anchoring partner. We, now report the structures of two D/D-AKAP peptide complexes obtained by, solution NMR methods, one with Ht31(493-515) and the other with, AKAP79(392-413). We present the first direct structural data demonstrating, the helical nature of the peptides. The structures reveal conserved, hydrophobic interaction surfaces on the helical AKAP peptides and the PKA, R subunit, which are responsible for mediating the high affinity, association in the complexes. In a departure from the dimer-dimer, interactions seen in other X-type four-helix bundle dimeric proteins, our, structures reveal a novel hydrophobic groove that accommodates one AKAP, per RIIalpha D/D.
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<StructureSection load='2h9r' size='340' side='right'caption='[[2h9r]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2h9r]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. The August 2012 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''cAMP-dependent Protein Kinase (PKA)'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2012_8 10.2210/rcsb_pdb/mom_2012_8]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H9R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h9r OCA], [https://pdbe.org/2h9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h9r RCSB], [https://www.ebi.ac.uk/pdbsum/2h9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h9r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KAP2_RAT KAP2_RAT] Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/2h9r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h9r ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The specificity of intracellular signaling events is controlled, in part, by compartmentalization of protein kinases and phosphatases. The subcellular localization of these enzymes is often maintained by protein- protein interactions. A prototypic example is the compartmentalization of the cAMP-dependent protein kinase (PKA) through its association with A-kinase anchoring proteins (AKAPs). A docking and dimerization domain (D/D) located within the first 45 residues of each regulatory (R) subunit protomer forms a high affinity binding site for its anchoring partner. We now report the structures of two D/D-AKAP peptide complexes obtained by solution NMR methods, one with Ht31(493-515) and the other with AKAP79(392-413). We present the first direct structural data demonstrating the helical nature of the peptides. The structures reveal conserved hydrophobic interaction surfaces on the helical AKAP peptides and the PKA R subunit, which are responsible for mediating the high affinity association in the complexes. In a departure from the dimer-dimer interactions seen in other X-type four-helix bundle dimeric proteins, our structures reveal a novel hydrophobic groove that accommodates one AKAP per RIIalpha D/D.
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==About this Structure==
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A novel mechanism of PKA anchoring revealed by solution structures of anchoring complexes.,Newlon MG, Roy M, Morikis D, Carr DW, Westphal R, Scott JD, Jennings PA EMBO J. 2001 Apr 2;20(7):1651-62. PMID:11285229<ref>PMID:11285229</ref>
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2H9R is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Active as [http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2H9R OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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A novel mechanism of PKA anchoring revealed by solution structures of anchoring complexes., Newlon MG, Roy M, Morikis D, Carr DW, Westphal R, Scott JD, Jennings PA, EMBO J. 2001 Apr 2;20(7):1651-62. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11285229 11285229]
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</div>
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[[Category: Non-specific serine/threonine protein kinase]]
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<div class="pdbe-citations 2h9r" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Rattus norvegicus]]
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[[Category: Coghlan, V.]]
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[[Category: Hausken, Z.E.]]
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[[Category: Jennings, P.A.]]
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[[Category: Morikis, D.]]
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[[Category: Newlon, M.G.]]
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[[Category: Roy, M.]]
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[[Category: Scott, J.D.]]
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[[Category: 4-helix bundle]]
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[[Category: akap]]
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[[Category: helix-loop-helix]]
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[[Category: nmr]]
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[[Category: pka]]
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[[Category: protein-peptide complex]]
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[[Category: signal transduction]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 22:28:55 2007''
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==See Also==
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*[[CAMP-dependent protein kinase 3D structures|CAMP-dependent protein kinase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Rattus norvegicus]]
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[[Category: Coghlan V]]
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[[Category: Hausken ZE]]
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[[Category: Jennings PA]]
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[[Category: Morikis D]]
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[[Category: Newlon MG]]
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[[Category: Roy M]]
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[[Category: Scott JD]]

Current revision

Docking and dimerization domain (D/D) of the regulatory subunit of the Type II-alpha cAMP-dependent protein kinase A associated with a Peptide derived from an A-kinase anchoring protein (AKAP)

PDB ID 2h9r

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