2e1v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 30 October 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2e1v.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Dendranthema morifolium DmAT, seleno-methionine derivative==
-
The line below this paragraph, containing "STRUCTURE_2e1v", creates the "Structure Box" on the page.
+
<StructureSection load='2e1v' size='340' side='right'caption='[[2e1v]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2e1v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chrysanthemum_x_morifolium Chrysanthemum x morifolium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E1V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2e1v| PDB=2e1v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e1v OCA], [https://pdbe.org/2e1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e1v RCSB], [https://www.ebi.ac.uk/pdbsum/2e1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e1v ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of Dendranthema morifolium DmAT, seleno-methionine derivative'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A4PHY4_CHRMO A4PHY4_CHRMO]
-
 
+
== Evolutionary Conservation ==
-
==Overview==
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e1/2e1v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e1v ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
The BAHD family is a class of acyl-CoA-dependent acyltransferases that are involved in plant secondary metabolism and show a diverse range of specificities for acyl acceptors. Anthocyanin acyltransferases make up an important class of the BAHD family and catalyze the acylation of anthocyanins that are responsible for most of the red-to-blue colors of flowers. Here, we describe crystallographic and mutational studies of three similar anthocyanin malonyltransferases from red chrysanthemum petals: anthocyanidin 3-O-glucoside-6''-O-malonyltransferase (Dm3MaT1), anthocyanidin 3-O-glucoside-3'', 6''-O-dimalonyltransferase (Dm3MaT2), and a homolog (Dm3MaT3). Mutational analyses revealed that seven amino acid residues in the N- and C-terminal regions are important for the differential acyl-acceptor specificity between Dm3MaT1 and Dm3MaT2. Crystallographic studies of Dm3MaT3 provided the first structure of a BAHD member, complexed with acyl-CoA, showing the detailed interactions between the enzyme and acyl-CoA molecules. The structure, combined with the results of mutational analyses, allowed us to identify the acyl-acceptor binding site of anthocyanin malonyltransferases, which is structurally different from the corresponding portion of vinorine synthase, another BAHD member, thus permitting the diversity of the acyl-acceptor specificity of BAHD family to be understood.
The BAHD family is a class of acyl-CoA-dependent acyltransferases that are involved in plant secondary metabolism and show a diverse range of specificities for acyl acceptors. Anthocyanin acyltransferases make up an important class of the BAHD family and catalyze the acylation of anthocyanins that are responsible for most of the red-to-blue colors of flowers. Here, we describe crystallographic and mutational studies of three similar anthocyanin malonyltransferases from red chrysanthemum petals: anthocyanidin 3-O-glucoside-6''-O-malonyltransferase (Dm3MaT1), anthocyanidin 3-O-glucoside-3'', 6''-O-dimalonyltransferase (Dm3MaT2), and a homolog (Dm3MaT3). Mutational analyses revealed that seven amino acid residues in the N- and C-terminal regions are important for the differential acyl-acceptor specificity between Dm3MaT1 and Dm3MaT2. Crystallographic studies of Dm3MaT3 provided the first structure of a BAHD member, complexed with acyl-CoA, showing the detailed interactions between the enzyme and acyl-CoA molecules. The structure, combined with the results of mutational analyses, allowed us to identify the acyl-acceptor binding site of anthocyanin malonyltransferases, which is structurally different from the corresponding portion of vinorine synthase, another BAHD member, thus permitting the diversity of the acyl-acceptor specificity of BAHD family to be understood.
-
==About this Structure==
+
Structural and mutational studies of anthocyanin malonyltransferases establish the features of BAHD enzyme catalysis.,Unno H, Ichimaida F, Suzuki H, Takahashi S, Tanaka Y, Saito A, Nishino T, Kusunoki M, Nakayama T J Biol Chem. 2007 May 25;282(21):15812-22. Epub 2007 Mar 23. PMID:17383962<ref>PMID:17383962</ref>
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E1V OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structural and mutational studies of anthocyanin malonyltransferases establish the features of BAHD enzyme catalysis., Unno H, Ichimaida F, Suzuki H, Takahashi S, Tanaka Y, Saito A, Nishino T, Kusunoki M, Nakayama T, J Biol Chem. 2007 May 25;282(21):15812-22. Epub 2007 Mar 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17383962 17383962]
+
</div>
-
[[Category: Ichimaida, F.]]
+
<div class="pdbe-citations 2e1v" style="background-color:#fffaf0;"></div>
-
[[Category: Kusunoki, M.]]
+
== References ==
-
[[Category: Nakayama, T.]]
+
<references/>
-
[[Category: Unno, H.]]
+
__TOC__
-
[[Category: Acyl transferase]]
+
</StructureSection>
-
[[Category: Bahd superfamily]]
+
[[Category: Chrysanthemum x morifolium]]
-
[[Category: Dendranthema morifolium]]
+
[[Category: Large Structures]]
-
[[Category: Dmat]]
+
[[Category: Ichimaida F]]
-
[[Category: Seleno-methionine derivative]]
+
[[Category: Kusunoki M]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 01:46:05 2008''
+
[[Category: Nakayama T]]
 +
[[Category: Unno H]]

Current revision

Crystal structure of Dendranthema morifolium DmAT, seleno-methionine derivative

PDB ID 2e1v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools