This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2e3v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:46, 10 February 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2e3v.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4==
-
The line below this paragraph, containing "STRUCTURE_2e3v", creates the "Structure Box" on the page.
+
<StructureSection load='2e3v' size='340' side='right'caption='[[2e3v]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2e3v]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E3V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2e3v| PDB=2e3v | SCENE= }}
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2haz|2haz]]</div></td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NCAM1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-
'''Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4'''
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e3v OCA], [https://pdbe.org/2e3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e3v RCSB], [https://www.ebi.ac.uk/pdbsum/2e3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e3v ProSAT], [https://www.topsan.org/Proteins/RSGI/2e3v TOPSAN]</span></td></tr>
-
 
+
</table>
-
 
+
== Function ==
-
==About this Structure==
+
[[https://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
-
2E3V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E3V OCA].
+
== Evolutionary Conservation ==
-
[[Category: Homo sapiens]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Single protein]]
+
Check<jmol>
-
[[Category: Chen, L.]]
+
<jmolCheckbox>
-
[[Category: Kishishita, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/2e3v_consurf.spt"</scriptWhenChecked>
-
[[Category: Liu, Z J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Nishino, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmolCheckbox>
-
[[Category: Saijo, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e3v ConSurf].
-
[[Category: Shirouzu, M.]]
+
<div style="clear:both"></div>
-
[[Category: Wang, B C.]]
+
__TOC__
-
[[Category: Yokoyama, S.]]
+
</StructureSection>
 +
[[Category: Human]]
 +
[[Category: Large Structures]]
 +
[[Category: Chen, L]]
 +
[[Category: Kishishita, S]]
 +
[[Category: Liu, Z J]]
 +
[[Category: Nishino, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Saijo, S]]
 +
[[Category: Shirouzu, M]]
 +
[[Category: Wang, B C]]
 +
[[Category: Yokoyama, S]]
[[Category: Cd56 antigen]]
[[Category: Cd56 antigen]]
[[Category: Cell adhesion]]
[[Category: Cell adhesion]]
Line 34: Line 44:
[[Category: Ncam-120]]
[[Category: Ncam-120]]
[[Category: Nppsfa]]
[[Category: Nppsfa]]
-
[[Category: Riken structural genomics/proteomics initiative]]
 
[[Category: Rsgi]]
[[Category: Rsgi]]
-
[[Category: Structural genomic]]
 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 01:52:34 2008''
 

Current revision

Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4

PDB ID 2e3v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2e3v"
Personal tools