This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2e6k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:35, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2e6k.jpg|left|200px]]
 
-
<!--
+
==X-ray structure of Thermus thermopilus HB8 TT0505==
-
The line below this paragraph, containing "STRUCTURE_2e6k", creates the "Structure Box" on the page.
+
<StructureSection load='2e6k' size='340' side='right'caption='[[2e6k]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2e6k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E6K FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2e6k| PDB=2e6k | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e6k OCA], [https://pdbe.org/2e6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e6k RCSB], [https://www.ebi.ac.uk/pdbsum/2e6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e6k ProSAT], [https://www.topsan.org/Proteins/RSGI/2e6k TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5SM35_THET8 Q5SM35_THET8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/2e6k_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e6k ConSurf].
 +
<div style="clear:both"></div>
-
'''X-ray structure of Thermus thermopilus HB8 TT0505'''
+
==See Also==
-
 
+
*[[Transketolase 3D structures|Transketolase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2E6K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E6K OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Agari Y]]
-
[[Category: Transketolase]]
+
[[Category: Ebihara A]]
-
[[Category: Agari, Y.]]
+
[[Category: Iino H]]
-
[[Category: Ebihara, A.]]
+
[[Category: Kamitori S]]
-
[[Category: Iino, H.]]
+
[[Category: Kanagawa M]]
-
[[Category: Kamitori, S.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kanagawa, M.]]
+
[[Category: Nakagawa N]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Yokoyama S]]
-
[[Category: Nakagawa, N.]]
+
[[Category: Yoshida H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Yoshida, H.]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
[[Category: Transketolase]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 02:01:20 2008''
+

Current revision

X-ray structure of Thermus thermopilus HB8 TT0505

PDB ID 2e6k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2e6k"
Personal tools