This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2eri

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:57, 22 December 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2eri.gif|left|200px]]
 
-
<!--
+
==Solution structure of circulin B==
-
The line below this paragraph, containing "STRUCTURE_2eri", creates the "Structure Box" on the page.
+
<StructureSection load='2eri' size='340' side='right'caption='[[2eri]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2eri]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chapa Chapa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ERI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ERI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eri OCA], [https://pdbe.org/2eri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eri RCSB], [https://www.ebi.ac.uk/pdbsum/2eri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eri ProSAT]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_2eri| PDB=2eri | SCENE= }}
+
== Function ==
-
 
+
[[https://www.uniprot.org/uniprot/CIRB_CHAPA CIRB_CHAPA]] Probably participates in a plant defense mechanism. Has antibiotic activity. Inhibits the cytopathic effects and replication of the human immunodeficiency virus. Active against both Gram-positive and Gram-negative bacteria.
-
'''Solution structure of circulin B'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2ERI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chassalia_parviflora Chassalia parviflora]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ERI OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/2eri_consurf.spt"</scriptWhenChecked>
-
[[Category: Chassalia parviflora]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Craik, D J.]]
+
</jmolCheckbox>
-
[[Category: Daly, N L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eri ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Chapa]]
 +
[[Category: Large Structures]]
 +
[[Category: Craik, D J]]
 +
[[Category: Daly, N L]]
 +
[[Category: Antibiotic]]
[[Category: Beta hairpin]]
[[Category: Beta hairpin]]
[[Category: Beta turn]]
[[Category: Beta turn]]
[[Category: Cystine knot]]
[[Category: Cystine knot]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 03:02:10 2008''
 

Current revision

Solution structure of circulin B

PDB ID 2eri

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools