This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2f09
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2f09.gif|left|200px]] | ||
| - | + | ==Solution Structure of the gene product of E. coli gene ydhA== | |
| - | + | <StructureSection load='2f09' size='340' side='right'caption='[[2f09]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2f09]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F09 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F09 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ydhA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f09 OCA], [https://pdbe.org/2f09 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f09 RCSB], [https://www.ebi.ac.uk/pdbsum/2f09 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f09 ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [[https://www.uniprot.org/uniprot/MLIC_ECOLI MLIC_ECOLI]] Specifically inhibits C-type lysozymes.<ref>PMID:18369469</ref> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f0/2f09_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: OCSP, Ontario Centre for Structural Proteomics | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Revington, M J | + | </jmolCheckbox> |
| - | [[Category: Shaw, G S | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f09 ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Ecoli]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: OCSP, Ontario Centre for Structural Proteomics]] | ||
| + | [[Category: Revington, M J]] | ||
| + | [[Category: Shaw, G S]] | ||
| + | [[Category: Strand beta-barrel]] | ||
[[Category: Ocsp]] | [[Category: Ocsp]] | ||
[[Category: Ontario centre for structural proteomic]] | [[Category: Ontario centre for structural proteomic]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
| - | + | [[Category: Unknown function]] | |
Current revision
Solution Structure of the gene product of E. coli gene ydhA
| |||||||||||
