This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2jii
From Proteopedia
(Difference between revisions)
| (19 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2jii.gif|left|200px]]<br /> | ||
| - | <applet load="2jii" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2jii, resolution 2.00Å" /> | ||
| - | '''STRUCTURE OF VACCINIA RELATED KINASE 3'''<br /> | ||
| - | == | + | ==Structure of vaccinia related kinase 3== |
| - | + | <StructureSection load='2jii' size='340' side='right'caption='[[2jii]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2jii]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JII FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jii OCA], [https://pdbe.org/2jii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jii RCSB], [https://www.ebi.ac.uk/pdbsum/2jii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jii ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/VRK3_HUMAN VRK3_HUMAN] Inactive kinase that suppresses ERK activity by promoting phosphatase activity of DUSP3 which specifically dephosphorylates and inactivates ERK in the nucleus.<ref>PMID:14645249</ref> <ref>PMID:19141289</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jii_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jii ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Arrowsmith CH]] | |
| - | [[Category: Arrowsmith | + | [[Category: Bunkoczi G]] |
| - | [[Category: Bunkoczi | + | [[Category: Burgess-Brown N]] |
| - | [[Category: Burgess-Brown | + | [[Category: Cooper C]] |
| - | [[Category: Cooper | + | [[Category: Edwards A]] |
| - | + | [[Category: Eswaran J]] | |
| - | [[Category: Edwards | + | [[Category: Fedorov O]] |
| - | [[Category: Eswaran | + | [[Category: Keates T]] |
| - | [[Category: Fedorov | + | [[Category: Knapp S]] |
| - | [[Category: Keates | + | [[Category: Pike ACW]] |
| - | [[Category: Knapp | + | [[Category: Salah E]] |
| - | [[Category: Pike | + | [[Category: Savitsky P]] |
| - | [[Category: Salah | + | [[Category: Sobott F]] |
| - | [[Category: Savitsky | + | [[Category: Sundstrom M]] |
| - | [[Category: Sobott | + | [[Category: Ugochukwu E]] |
| - | [[Category: Sundstrom | + | [[Category: Uppenberg J]] |
| - | [[Category: Ugochukwu | + | [[Category: Weigelt J]] |
| - | [[Category: Uppenberg | + | [[Category: Von Delft F]] |
| - | [[Category: Weigelt | + | |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of vaccinia related kinase 3
| |||||||||||
Categories: Homo sapiens | Large Structures | Arrowsmith CH | Bunkoczi G | Burgess-Brown N | Cooper C | Edwards A | Eswaran J | Fedorov O | Keates T | Knapp S | Pike ACW | Salah E | Savitsky P | Sobott F | Sundstrom M | Ugochukwu E | Uppenberg J | Weigelt J | Von Delft F

