2fmy

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[[Image:2fmy.jpg|left|200px]]
 
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==CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form)==
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The line below this paragraph, containing "STRUCTURE_2fmy", creates the "Structure Box" on the page.
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<StructureSection load='2fmy' size='340' side='right'caption='[[2fmy]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2fmy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans Carboxydothermus hydrogenoformans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FMY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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{{STRUCTURE_2fmy| PDB=2fmy | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fmy OCA], [https://pdbe.org/2fmy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fmy RCSB], [https://www.ebi.ac.uk/pdbsum/2fmy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fmy ProSAT]</span></td></tr>
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</table>
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'''CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form)'''
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== Function ==
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[https://www.uniprot.org/uniprot/Q3AB29_CARHZ Q3AB29_CARHZ]
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== Evolutionary Conservation ==
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==Overview==
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[[Image:Consurf_key_small.gif|200px|right]]
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CooA is a CO-dependent transcriptional activator and transmits a CO-sensing signal to a DNA promoter that controls the expression of the genes responsible for CO metabolism. CooA contains a b-type heme as the active site for sensing CO. CO binding to the heme induces a conformational change that switches CooA from an inactive to an active DNA-binding form. Here, we report the crystal structure of an imidazole-bound form of CooA from Carboxydothermus hydrogenoformans (Ch-CooA). In the resting form, Ch-CooA has a six-coordinate ferrous heme with two endogenous axial ligands, the alpha-amino group of the N-terminal amino acid and a histidine residue. The N-terminal amino group of CooA that is coordinated to the heme iron is replaced by CO. This substitution presumably triggers a structural change leading to the active form. The crystal structure of Ch-CooA reveals that imidazole binds to the heme, which replaces the N terminus, as does CO. The dissociated N terminus is positioned approximately 16 A from the heme iron in the imidazole-bound form. In addition, the heme plane is rotated by 30 degrees about the normal of the porphyrin ring compared to that found in the inactive form of Rhodospirillum rubrum CooA. Even though the ligand exchange, imidazole-bound Ch-CooA remains in the inactive form for DNA binding. These results indicate that the release of the N terminus resulting from imidazole binding is not sufficient to activate CooA. The structure provides new insights into the structural changes required to achieve activation.
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/2fmy_consurf.spt"</scriptWhenChecked>
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2FMY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans Carboxydothermus hydrogenoformans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FMY OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==Reference==
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</jmolCheckbox>
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Crystal structure of CO-sensing transcription activator CooA bound to exogenous ligand imidazole., Komori H, Inagaki S, Yoshioka S, Aono S, Higuchi Y, J Mol Biol. 2007 Mar 30;367(3):864-71. Epub 2007 Jan 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17292914 17292914]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fmy ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Carboxydothermus hydrogenoformans]]
[[Category: Carboxydothermus hydrogenoformans]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Higuchi, Y.]]
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[[Category: Higuchi Y]]
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[[Category: Komori, H.]]
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[[Category: Komori H]]
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[[Category: Dna transcription regulator]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 04:05:06 2008''
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Current revision

CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form)

PDB ID 2fmy

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