This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hay

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:07, 5 January 2022) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hay.gif|left|200px]]
 
-
<!--
+
==The Crystal Structure of the Putative NAD(P)H-Flavin Oxidoreductase from Streptococcus pyogenes M1 GAS==
-
The line below this paragraph, containing "STRUCTURE_2hay", creates the "Structure Box" on the page.
+
<StructureSection load='2hay' size='340' side='right'caption='[[2hay]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2hay]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Strp1 Strp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HAY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2hay| PDB=2hay | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hay OCA], [https://pdbe.org/2hay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hay RCSB], [https://www.ebi.ac.uk/pdbsum/2hay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hay ProSAT], [https://www.topsan.org/Proteins/MCSG/2hay TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''The Crystal Structure of the Putative NAD(P)H-Flavin Oxidoreductase from Streptococcus pyogenes M1 GAS'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2HAY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_m1 Streptococcus pyogenes serotype m1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HAY OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/2hay_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Streptococcus pyogenes serotype m1]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Clancy, S.]]
+
</jmolCheckbox>
-
[[Category: Duggan, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hay ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kim, Y.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Strp1]]
 +
[[Category: Clancy, S]]
 +
[[Category: Duggan, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
[[Category: Alpha-beta structure]]
[[Category: Alpha-beta structure]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 06:04:24 2008''
+

Current revision

The Crystal Structure of the Putative NAD(P)H-Flavin Oxidoreductase from Streptococcus pyogenes M1 GAS

PDB ID 2hay

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools