This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pbc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /> <applet load="2pbc" size="450" color="white" frame="true" align="right" spinBox="true" caption="2pbc, resolution 1.80&Aring;" /> '''FK506-binding prote...)
Current revision (10:58, 30 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pbc.gif|left|200px]]<br />
 
-
<applet load="2pbc" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2pbc, resolution 1.80&Aring;" />
 
-
'''FK506-binding protein 2'''<br />
 
-
==About this Structure==
+
==FK506-binding protein 2==
-
2PBC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with PEG as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2PBC OCA].
+
<StructureSection load='2pbc' size='340' side='right'caption='[[2pbc]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Peptidylprolyl isomerase]]
+
<table><tr><td colspan='2'>[[2pbc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBC FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
[[Category: Arrowsmith, C.H.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
[[Category: Bochkarev, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbc OCA], [https://pdbe.org/2pbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbc RCSB], [https://www.ebi.ac.uk/pdbsum/2pbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbc ProSAT]</span></td></tr>
-
[[Category: Butler-Cole, C.]]
+
</table>
-
[[Category: Davis, T.]]
+
== Function ==
-
[[Category: Dhe-Paganon, S.]]
+
[https://www.uniprot.org/uniprot/FKBP2_HUMAN FKBP2_HUMAN] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
-
[[Category: Edwards, A.M.]]
+
== Evolutionary Conservation ==
-
[[Category: Neculai, D.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: SGC, Structural.Genomics.Consortium.]]
+
Check<jmol>
-
[[Category: Sicheri, F.]]
+
<jmolCheckbox>
-
[[Category: Sundstrom, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbc_consurf.spt"</scriptWhenChecked>
-
[[Category: Walker, J.R.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Weigelt, J.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: PEG]]
+
</jmolCheckbox>
-
[[Category: endoplasmic reticulum]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbc ConSurf].
-
[[Category: isomerase]]
+
<div style="clear:both"></div>
-
[[Category: polymorphism]]
+
-
[[Category: rotamase]]
+
-
[[Category: sgc]]
+
-
[[Category: structural genomics]]
+
-
[[Category: structural genomics consortium]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 23:22:09 2007''
+
==See Also==
 +
*[[FKBP 3D structures|FKBP 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Arrowsmith CH]]
 +
[[Category: Bochkarev A]]
 +
[[Category: Butler-Cole C]]
 +
[[Category: Davis T]]
 +
[[Category: Dhe-Paganon S]]
 +
[[Category: Edwards AM]]
 +
[[Category: Neculai D]]
 +
[[Category: Sicheri F]]
 +
[[Category: Sundstrom M]]
 +
[[Category: Walker JR]]
 +
[[Category: Weigelt J]]

Current revision

FK506-binding protein 2

PDB ID 2pbc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools