2ytc

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(New page: 200px<br /> <applet load="2ytc" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ytc" /> '''Solution structure of RNA binding domain in...)
Current revision (19:17, 29 May 2024) (edit) (undo)
 
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[[Image:2ytc.gif|left|200px]]<br />
 
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<applet load="2ytc" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ytc" />
 
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'''Solution structure of RNA binding domain in Pre-mRNA-splicing factor RBM22'''<br />
 
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==About this Structure==
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==Solution structure of RNA binding domain in Pre-mRNA-splicing factor RBM22==
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2YTC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2YTC OCA].
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<StructureSection load='2ytc' size='340' side='right'caption='[[2ytc]]' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2ytc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YTC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YTC FirstGlance]. <br>
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[[Category: Inoue, M.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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[[Category: Kasahara, N.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ytc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ytc OCA], [https://pdbe.org/2ytc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ytc RCSB], [https://www.ebi.ac.uk/pdbsum/2ytc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ytc ProSAT], [https://www.topsan.org/Proteins/RSGI/2ytc TOPSAN]</span></td></tr>
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[[Category: Kigawa, T.]]
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</table>
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[[Category: Muto, Y.]]
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== Function ==
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[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
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[https://www.uniprot.org/uniprot/RBM22_HUMAN RBM22_HUMAN] Involved in the first step of pre-mRNA splicing. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic phases of the spliceosome cycle. Involved in both translocations of the nuclear SLU7 to the cytoplasm and the cytosolic calcium-binding protein PDCD6 to the nucleus upon cellular stress responses.<ref>PMID:17045351</ref> <ref>PMID:21122810</ref> <ref>PMID:22246180</ref>
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[[Category: Shirouzu, M.]]
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== Evolutionary Conservation ==
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[[Category: Terada, T.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Tsuda, K.]]
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Check<jmol>
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[[Category: Yokoyama, S.]]
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<jmolCheckbox>
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[[Category: national project on protein structural and functional analyses]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yt/2ytc_consurf.spt"</scriptWhenChecked>
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[[Category: nppsfa]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: rbd]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: riken structural genomics/proteomics initiative]]
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</jmolCheckbox>
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[[Category: rrm domain]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ytc ConSurf].
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[[Category: rsgi]]
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<div style="clear:both"></div>
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[[Category: structural genomics]]
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[[Category: transcription]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 23:45:15 2007''
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==See Also==
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*[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Inoue M]]
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[[Category: Kasahara N]]
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[[Category: Kigawa T]]
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[[Category: Muto Y]]
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[[Category: Shirouzu M]]
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[[Category: Terada T]]
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[[Category: Tsuda K]]
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[[Category: Yokoyama S]]

Current revision

Solution structure of RNA binding domain in Pre-mRNA-splicing factor RBM22

PDB ID 2ytc

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OCA

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