2j4t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:17, 17 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2j4t.gif|left|200px]]
 
-
<!--
+
==Biological and Structural Features of Murine Angiogenin-4, an Angiogenic Protein==
-
The line below this paragraph, containing "STRUCTURE_2j4t", creates the "Structure Box" on the page.
+
<StructureSection load='2j4t' size='340' side='right'caption='[[2j4t]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2j4t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J4T FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j4t OCA], [https://pdbe.org/2j4t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j4t RCSB], [https://www.ebi.ac.uk/pdbsum/2j4t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j4t ProSAT]</span></td></tr>
-
{{STRUCTURE_2j4t| PDB=2j4t | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ANG4_MOUSE ANG4_MOUSE] Has bactericidal activity against E.faecalis and L.monocytogenes, but not against L.innocua and E.coli. Promotes angiogenesis (in vitro). Has low ribonuclease activity (in vitro). Promotes proliferation of melanoma cells, but not of endothelial cells or fibroblasts (in vitro).<ref>PMID:12548285</ref> <ref>PMID:17279775</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j4t_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j4t ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Murine angiogenin-4 (mAng-4) is a member of the pancreatic ribonuclease superfamily that is expressed in some endodermally derived organs. We now show that mAng-4 is angiogenic using a thoracic aorta assay never before applied to the angiogenins. mAng-4, human angiogenin (hAng), and murine angiogenin-1 (mAng-1) stimulate the proliferation of IGR1 melanoma cells but do not stimulate the proliferation or migration of bovine corneal endothelial cells or primary mouse embryonic fibroblasts. In addition, we report the 3-D structure of mAng-4 at 2.02-A resolution. The structure shows that the residues forming the putative B1, P1, and B2 RNA-binding subsites occupy positions similar to their hAng counterparts. The B1 subsite is obstructed by Glu115 and Ile118. The obstruction is stabilized by a novel salt bridge between the C-terminal carboxyl group and the side chain of Arg99. Through mutational studies, we identify residues critical to the angiogenic function of mAng-4. The effect of H12A and H112A mutations in the catalytic site indicates that ribonucleolytic activity is essential to angiogenesis. The consequences of a nearby E115A mutation are consistent with a significant role for Glu115 in the attenuation of enzymatic activity but also suggest that sufficient suppression of catalysis is necessary for angiogenesis. The effect of an R32A mutation in the putative nuclear localization sequence indicates that this residue is crucial for angiogenesis. In the putative cell-binding segment, the replacement of Lys59 with Asn (its counterpart at position 61 of hAng) does not abrogate enzymatic activity but abolishes angiogenic activity, the reason for which is unclear.
-
'''BIOLOGICAL AND STRUCTURAL FEATURES OF MURINE ANGIOGENIN-4, AN ANGIOGENIC PROTEIN'''
+
Biological and structural features of murine angiogenin-4, an angiogenic protein.,Crabtree B, Holloway DE, Baker MD, Acharya KR, Subramanian V Biochemistry. 2007 Mar 6;46(9):2431-43. Epub 2007 Feb 6. PMID:17279775<ref>PMID:17279775</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2j4t" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
2J4T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4T OCA].
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Pancreatic ribonuclease]]
+
[[Category: Acharya KR]]
-
[[Category: Single protein]]
+
[[Category: Baker MD]]
-
[[Category: Acharya, K R.]]
+
[[Category: Crabtree B]]
-
[[Category: Baker, M D.]]
+
[[Category: Holloway DE]]
-
[[Category: Crabtree, B.]]
+
[[Category: Subramanian V]]
-
[[Category: Holloway, D E.]]
+
-
[[Category: Subramanian, V.]]
+
-
[[Category: Angiogenesis]]
+
-
[[Category: Cancer]]
+
-
[[Category: Developmental protein]]
+
-
[[Category: Differentiation]]
+
-
[[Category: Endonuclease]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Protein synthesis inhibitor]]
+
-
[[Category: Pyrrolidone carboxylic acid]]
+
-
[[Category: Ribonuclease]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 08:20:00 2008''
+

Current revision

Biological and Structural Features of Murine Angiogenin-4, an Angiogenic Protein

PDB ID 2j4t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools