2jep

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:45, 13 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jep.jpg|left|200px]]
 
-
<!--
+
==Native family 5 xyloglucanase from Paenibacillus pabuli==
-
The line below this paragraph, containing "STRUCTURE_2jep", creates the "Structure Box" on the page.
+
<StructureSection load='2jep' size='340' side='right'caption='[[2jep]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jep]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JEP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
{{STRUCTURE_2jep| PDB=2jep | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jep OCA], [https://pdbe.org/2jep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jep RCSB], [https://www.ebi.ac.uk/pdbsum/2jep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jep ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/H9KVH3_9BACL H9KVH3_9BACL]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/2jep_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jep ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The plant cell wall is a complex material in which the cellulose microfibrils are embedded within a mesh of other polysaccharides, some of which are loosely termed "hemicellulose." One such hemicellulose is xyloglucan, which displays a beta-1,4-linked d-glucose backbone substituted with xylose, galactose, and occasionally fucose moieties. Both xyloglucan and the enzymes responsible for its modification and degradation are finding increasing prominence, reflecting both the drive for enzymatic biomass conversion, their role in detergent applications, and the utility of modified xyloglucans for cellulose fiber modification. Here we present the enzymatic characterization and three-dimensional structures in ligand-free and xyloglucan-oligosaccharide complexed forms of two distinct xyloglucanases from glycoside hydrolase families GH5 and GH12. The enzymes, Paenibacillus pabuli XG5 and Bacillus licheniformis XG12, both display open active center grooves grafted upon their respective (beta/alpha)(8) and beta-jelly roll folds, in which the side chain decorations of xyloglucan may be accommodated. For the beta-jelly roll enzyme topology of GH12, binding of xylosyl and pendant galactosyl moieties is tolerated, but the enzyme is similarly competent in the degradation of unbranched glucans. In the case of the (beta/alpha)(8) GH5 enzyme, kinetically productive interactions are made with both xylose and galactose substituents, as reflected in both a high specific activity on xyloglucan and the kinetics of a series of aryl glycosides. The differential strategies for the accommodation of the side chains of xyloglucan presumably facilitate the action of these microbial hydrolases in milieus where diverse and differently substituted substrates may be encountered.
-
'''NATIVE FAMILY 5 XYLOGLUCANASE FROM PAENIBACILLUS PABULI'''
+
Characterization and three-dimensional structures of two distinct bacterial xyloglucanases from families GH5 and GH12.,Gloster TM, Ibatullin FM, Macauley K, Eklof JM, Roberts S, Turkenburg JP, Bjornvad ME, Jorgensen PL, Danielsen S, Johansen KS, Borchert TV, Wilson KS, Brumer H, Davies GJ J Biol Chem. 2007 Jun 29;282(26):19177-89. Epub 2007 Mar 21. PMID:17376777<ref>PMID:17376777</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2jep" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
2JEP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEP OCA].
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Paenibacillus pabuli]]
[[Category: Paenibacillus pabuli]]
-
[[Category: Single protein]]
+
[[Category: Bjornvad ME]]
-
[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
+
[[Category: Borchert TV]]
-
[[Category: Bjornvad, M E.]]
+
[[Category: Brumer H]]
-
[[Category: Borchert, T V.]]
+
[[Category: Danielsen S]]
-
[[Category: Brumer, H.]]
+
[[Category: Davies GJ]]
-
[[Category: Danielsen, S.]]
+
[[Category: Eklof JM]]
-
[[Category: Davies, G J.]]
+
[[Category: Gloster TM]]
-
[[Category: Eklof, J M.]]
+
[[Category: Ibatullin FM]]
-
[[Category: Gloster, T M.]]
+
[[Category: Johansen K]]
-
[[Category: Ibatullin, F M.]]
+
[[Category: Jorgensen PL]]
-
[[Category: Johansen, K.]]
+
[[Category: Macauley K]]
-
[[Category: Jorgensen, P L.]]
+
[[Category: Roberts S]]
-
[[Category: Macauley, K.]]
+
[[Category: Turkenburg JP]]
-
[[Category: Roberts, S.]]
+
[[Category: Wilson KS]]
-
[[Category: Turkenburg, J P.]]
+
-
[[Category: Wilson, K S.]]
+
-
[[Category: Family 5]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Plant cell wall]]
+
-
[[Category: Xyloglucanase]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 08:47:36 2008''
+

Current revision

Native family 5 xyloglucanase from Paenibacillus pabuli

PDB ID 2jep

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools