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| - | [[Image:2jpz.gif|left|200px]] | |
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| - | <!--
| + | ==Human telomere DNA quadruplex structure in K+ solution hybrid-2 form== |
| - | The line below this paragraph, containing "STRUCTURE_2jpz", creates the "Structure Box" on the page.
| + | <StructureSection load='2jpz' size='340' side='right'caption='[[2jpz]]' scene=''> |
| - | You may change the PDB parameter (which sets the PDB file loaded into the applet)
| + | == Structural highlights == |
| - | or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
| + | <table><tr><td colspan='2'>[[2jpz]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPZ FirstGlance]. <br> |
| - | or leave the SCENE parameter empty for the default display.
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | -->
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpz OCA], [https://pdbe.org/2jpz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpz RCSB], [https://www.ebi.ac.uk/pdbsum/2jpz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpz ProSAT]</span></td></tr> |
| - | {{STRUCTURE_2jpz| PDB=2jpz | SCENE= }}
| + | </table> |
| - | | + | __TOC__ |
| - | '''Structure of the hybrid-2 type intramolecular human telomeric G-quadruplex''' | + | </StructureSection> |
| - | | + | [[Category: Large Structures]] |
| - | | + | [[Category: Carver M]] |
| - | ==Overview== | + | [[Category: Dai J]] |
| - | Formation of the G-quadruplex in the human telomeric sequence can inhibit the activity of telomerase, thus the intramolecular telomeric G-quadruplexes have been considered as an attractive anticancer target. Information of intramolecular telomeric G-quadruplex structures formed under physiological conditions is important for structure-based drug design. Here, we report the first structure of the major intramolecular G-quadruplex formed in a native, non-modified human telomeric sequence in K(+) solution. This is a hybrid-type mixed parallel/antiparallel-G-stranded G-quadruplex, one end of which is covered by a novel T:A:T triple capping structure. This structure (Hybrid-2) and the previously reported Hybrid-1 structure differ in their loop arrangements, strand orientations and capping structures. The distinct capping structures appear to be crucial for the favored formation of the specific hybrid-type intramolecular telomeric G-quadruplexes, and may provide specific binding sites for drug targeting. Our study also shows that while the hybrid-type G-quadruplexes appear to be the major conformations in K(+) solution, human telomeric sequences are always in equilibrium between Hybrid-1 and Hybrid-2 structures, which is largely determined by the 3'-flanking sequence. Furthermore, both hybrid-type G-quadruplexes suggest a straightforward means for multimer formation with effective packing in the human telomeric sequence and provide important implications for drug targeting of G-quadruplexes in human telomeres.
| + | [[Category: Jones R]] |
| - | | + | [[Category: Punchihewa C]] |
| - | ==About this Structure==
| + | [[Category: Yang D]] |
| - | Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA]. | + | |
| - | | + | |
| - | ==Reference== | + | |
| - | Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence., Dai J, Carver M, Punchihewa C, Jones RA, Yang D, Nucleic Acids Res. 2007;35(15):4927-40. Epub 2007 Jul 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17626043 17626043]
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| - | [[Category: Carver, M.]]
| + | |
| - | [[Category: Dai, J.]]
| + | |
| - | [[Category: Jones, R.]]
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| - | [[Category: Punchihewa, C.]] | + | |
| - | [[Category: Yang, D.]] | + | |
| - | [[Category: Dna]] | + | |
| - | [[Category: Human telomeric sequence]] | + | |
| - | [[Category: Nmr]] | + | |
| - | [[Category: Quadruplex]] | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 09:10:15 2008''
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