2jq2

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[[Image:2jq2.gif|left|200px]]
 
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==NMR structure of the anticoccidial peptide PW2 in DPC micelles==
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The line below this paragraph, containing "STRUCTURE_2jq2", creates the "Structure Box" on the page.
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<StructureSection load='2jq2' size='340' side='right'caption='[[2jq2]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jq2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JQ2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jq2 OCA], [https://pdbe.org/2jq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jq2 RCSB], [https://www.ebi.ac.uk/pdbsum/2jq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jq2 ProSAT]</span></td></tr>
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{{STRUCTURE_2jq2| PDB=2jq2 | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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'''NMR structure of the anticoccidial peptide PW2 in DPC micelles'''
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== Publication Abstract from PubMed ==
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==Overview==
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PW2 is an anticoccidial peptide active against Eimeria acervulina and Eimeria tenella. We determined the structure of PW2 in dodecylphosphocholine micelles. The structure showed two distinct regions: an amphipathic N-terminal 3(10) helix and an aromatic region containing WWR interface-binding motif. The aromatic region acted as a scaffold of the protein in the interface and shared the same structure in both DPC and SDS micelles. N-terminal helix interacted with DPC but not with SDS interface. Chemical shift change was slow when SDS was added to PW2 in DPC and fast when DPC was added to PW2 in SDS, indicating that interaction with DPC micelles was kinetically more stable than with SDS micelles. Also, DPC interface was able to accommodate PW2, but it maintained the conformational arrangement in the aromatic region observed for SDS micelles. This behavior, which is different from that observed for other antimicrobial peptides with WWR motif, may be associated with the absence of PW2 antibacterial activity and its selectivity for Eimeria parasites.
PW2 is an anticoccidial peptide active against Eimeria acervulina and Eimeria tenella. We determined the structure of PW2 in dodecylphosphocholine micelles. The structure showed two distinct regions: an amphipathic N-terminal 3(10) helix and an aromatic region containing WWR interface-binding motif. The aromatic region acted as a scaffold of the protein in the interface and shared the same structure in both DPC and SDS micelles. N-terminal helix interacted with DPC but not with SDS interface. Chemical shift change was slow when SDS was added to PW2 in DPC and fast when DPC was added to PW2 in SDS, indicating that interaction with DPC micelles was kinetically more stable than with SDS micelles. Also, DPC interface was able to accommodate PW2, but it maintained the conformational arrangement in the aromatic region observed for SDS micelles. This behavior, which is different from that observed for other antimicrobial peptides with WWR motif, may be associated with the absence of PW2 antibacterial activity and its selectivity for Eimeria parasites.
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==About this Structure==
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Effect of micelle interface on the binding of anticoccidial PW2 peptide.,Tinoco LW, Gomes-Neto F, Valente AP, Almeida FC J Biomol NMR. 2007 Dec;39(4):315-22. Epub 2007 Oct 10. PMID:17926009<ref>PMID:17926009</ref>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JQ2 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Effect of micelle interface on the binding of anticoccidial PW2 peptide., Tinoco LW, Gomes-Neto F, Valente AP, Almeida FC, J Biomol NMR. 2007 Dec;39(4):315-22. Epub 2007 Oct 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17926009 17926009]
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</div>
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[[Category: Almeida, F C.]]
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<div class="pdbe-citations 2jq2" style="background-color:#fffaf0;"></div>
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[[Category: Gomes-Neto, F.]]
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== References ==
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[[Category: Tinoco, L W.]]
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<references/>
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[[Category: Valente, A P.]]
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__TOC__
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[[Category: Antimicrobial]]
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</StructureSection>
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[[Category: Antimicrobial protein]]
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[[Category: Large Structures]]
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[[Category: Dpc]]
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[[Category: Synthetic construct]]
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[[Category: Membrane]]
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[[Category: Almeida FC]]
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[[Category: Pw2]]
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[[Category: Gomes-Neto F]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 09:10:17 2008''
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[[Category: Tinoco LW]]
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[[Category: Valente AP]]

Current revision

NMR structure of the anticoccidial peptide PW2 in DPC micelles

PDB ID 2jq2

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