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Template:STRUCTURE 2nmz
From Proteopedia
(Difference between revisions)
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nmz, resolution 0.97Å (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=ROC...) |
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{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nmz, resolution 0.97Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2nmz]], [[Resolution|resolution]] 0.97Å (<scene name='initialview01'>default scene</scene>)}}} |
| - | + | |LIGAND= <scene name='pdbligand=ROC:(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | |
| - | |LIGAND= <scene name='pdbligand=ROC: | + | |
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span> | ||
|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1]) | |GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1]) | ||
| - | + | |RELATEDENTRY=[[2nmw|2nmw]], [[2nmy|2nmy]], [[2nnk|2nnk]], [[2nnp|2nnp]] | |
| - | |RELATEDENTRY=[[2nmw|2nmw]], [[2nmy|2nmy]] | + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span> |
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www. | + | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/2nmzA00 2Nmza00], [http://www.cathdb.info/domain/2nmzB00 2Nmzb00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR021109 Ipr021109], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000721 Ipr000721], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018061 Ipr018061], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001584 Ipr001584], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017856 Ipr017856], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002156 Ipr002156], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012344 Ipr012344], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000071 Ipr000071], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012337 Ipr012337], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010999 Ipr010999], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001037 Ipr001037], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010661 Ipr010661], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010659 Ipr010659], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000477 Ipr000477], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008919 Ipr008919], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001878 Ipr001878], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008916 Ipr008916], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003308 Ipr003308]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138386 d2nmza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138387 d2nmzb1]</span> |
| + | |uPDB=2NMZ|CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_2nmz_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_2nmz_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
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| 2nmz, resolution 0.97Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||||
| Gene: | gag (Human immunodeficiency virus 1) | ||||||||
| Activity: | HIV-1 retropepsin, with EC number 3.4.23.16 | ||||||||
| Related: | 2nmw, 2nmy, 2nnk, 2nnp | ||||||||
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| |||||||||
| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
