2noo

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[[Image:2noo.gif|left|200px]]
 
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==Crystal Structure of Mutant NikA==
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The line below this paragraph, containing "STRUCTURE_2noo", creates the "Structure Box" on the page.
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<StructureSection load='2noo' size='340' side='right'caption='[[2noo]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2noo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NOO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NOO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td></tr>
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{{STRUCTURE_2noo| PDB=2noo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2noo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2noo OCA], [https://pdbe.org/2noo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2noo RCSB], [https://www.ebi.ac.uk/pdbsum/2noo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2noo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NIKA_ECOLI NIKA_ECOLI] Involved in a nickel transport system, probably represents the nickel binder.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/no/2noo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2noo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Intracellular nickel is required by Escherichia coli as a cofactor for a number of enzymes and is necessary for anaerobic respiration. However, high concentrations of nickel are toxic, so both import and export systems have evolved to control the cellular level of the metal. The nik operon in E. coli encodes a nickel-uptake system that includes the periplasmic nickel-binding protein NikA. The crystal structures of wild-type NikA both bound to nickel and in the apo form have been solved previously. The liganded structure appeared to show an unusual interaction between the nickel and the protein in which no direct bonds are formed. The highly unusual nickel coordination suggested by the crystal structure contrasted strongly with earlier X-ray spectroscopic studies. The known nickel-binding site has been probed by extensive mutagenesis and isothermal titration calorimetry and it has been found that even large numbers of disruptive mutations appear to have little effect on the nickel affinity. The crystal structure of a binding-site mutant with nickel bound has been solved and it is found that nickel is bound to two histidine residues at a position distant from the previously characterized binding site. This novel site immediately resolves the conflict between the crystal structures and other biophysical analyses. The physiological relevance of the two binding sites is discussed.
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'''Crystal Structure of Mutant NikA'''
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Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.,Addy C, Ohara M, Kawai F, Kidera A, Ikeguchi M, Fuchigami S, Osawa M, Shimada I, Park SY, Tame JR, Heddle JG Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):221-9. Epub 2007, Jan 16. PMID:17242515<ref>PMID:17242515</ref>
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==Overview==
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Intracellular nickel is required by Escherichia coli as a cofactor for a number of enzymes and is necessary for anaerobic respiration. However, high concentrations of nickel are toxic, so both import and export systems have evolved to control the cellular level of the metal. The nik operon in E. coli encodes a nickel-uptake system that includes the periplasmic nickel-binding protein NikA. The crystal structures of wild-type NikA both bound to nickel and in the apo form have been solved previously. The liganded structure appeared to show an unusual interaction between the nickel and the protein in which no direct bonds are formed. The highly unusual nickel coordination suggested by the crystal structure contrasted strongly with earlier X-ray spectroscopic studies. The known nickel-binding site has been probed by extensive mutagenesis and isothermal titration calorimetry and it has been found that even large numbers of disruptive mutations appear to have little effect on the nickel affinity. The crystal structure of a binding-site mutant with nickel bound has been solved and it is found that nickel is bound to two histidine residues at a position distant from the previously characterized binding site. This novel site immediately resolves the conflict between the crystal structures and other biophysical analyses. The physiological relevance of the two binding sites is discussed.
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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2NOO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NOO OCA].
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</div>
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<div class="pdbe-citations 2noo" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography., Addy C, Ohara M, Kawai F, Kidera A, Ikeguchi M, Fuchigami S, Osawa M, Shimada I, Park SY, Tame JR, Heddle JG, Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):221-9. Epub 2007, Jan 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17242515 17242515]
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*[[ABC transporter 3D structures|ABC transporter 3D structures]]
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[[Category: Escherichia coli]]
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== References ==
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[[Category: Nickel-transporting ATPase]]
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<references/>
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[[Category: Single protein]]
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__TOC__
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[[Category: Addy, C.]]
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</StructureSection>
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[[Category: Fuchigami, S.]]
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[[Category: Escherichia coli K-12]]
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[[Category: Heddle, J G.]]
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[[Category: Large Structures]]
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[[Category: Ikeguchi, M.]]
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[[Category: Addy C]]
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[[Category: Kawai, F.]]
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[[Category: Fuchigami S]]
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[[Category: Kidera, A.]]
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[[Category: Heddle JG]]
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[[Category: Ohara, M.]]
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[[Category: Ikeguchi M]]
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[[Category: Osawa, M.]]
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[[Category: Kawai F]]
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[[Category: Park, S Y.]]
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[[Category: Kidera A]]
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[[Category: Shimada, I.]]
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[[Category: Ohara M]]
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[[Category: Tame, J R.H.]]
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[[Category: Osawa M]]
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[[Category: Iodine]]
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[[Category: Park SY]]
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[[Category: Nickel-bound]]
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[[Category: Shimada I]]
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[[Category: Periplasm]]
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[[Category: Tame JRH]]
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[[Category: Transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 09:42:47 2008''
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Crystal Structure of Mutant NikA

PDB ID 2noo

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