2nto

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:20, 30 August 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2nto.jpg|left|200px]]
 
-
<!--
+
==Structure of the Glutathione Transferase from Ochrobactrum anthropi in complex with glutathione==
-
The line below this paragraph, containing "STRUCTURE_2nto", creates the "Structure Box" on the page.
+
<StructureSection load='2nto' size='340' side='right'caption='[[2nto]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2nto]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_anthropi Brucella anthropi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NTO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.095&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2nto| PDB=2nto | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nto OCA], [https://pdbe.org/2nto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nto RCSB], [https://www.ebi.ac.uk/pdbsum/2nto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nto ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GST_BRUAN GST_BRUAN] Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nt/2nto_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nto ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
GSTs (glutathione transferases) are a multifunctional group of enzymes, widely distributed and involved in cellular detoxification processes. In the xenobiotic-degrading bacterium Ochrobactrum anthropi, GST is overexpressed in the presence of toxic concentrations of aromatic compounds such as 4-chlorophenol and atrazine. We have determined the crystal structure of the GST from O. anthropi (OaGST) in complex with GSH. Like other bacterial GSTs, OaGST belongs to the Beta class and shows a similar binding pocket for GSH. However, in contrast with the structure of Proteus mirabilis GST, GSH is not covalently bound to Cys10, but is present in the thiolate form. In our investigation of the structural basis for GSH stabilization, we have identified a conserved network of hydrogen-bond interactions, mediated by the presence of a structural water molecule that links Ser11 to Glu198. Partial disruption of this network, by mutagenesis of Ser11 to alanine, increases the K(m) for GSH 15-fold and decreases the catalytic efficiency 4-fold, even though Ser11 is not involved in GSH binding. Thermal- and chemical-induced unfolding studies point to a global effect of the mutation on the stability of the protein and to a central role of these residues in zippering the terminal helix of the C-terminal domain to the starting helix of the N-terminal domain.
-
'''Structure of the Glutathione Transferase from Ochrobactrum anthropi in complex with glutathione'''
+
Role of Ser11 in the stabilization of the structure of Ochrobactrum anthropi glutathione transferase.,Federici L, Masulli M, Bonivento D, Di Matteo A, Gianni S, Favaloro B, Di Ilio C, Allocati N Biochem J. 2007 Apr 15;403(2):267-74. PMID:17223798<ref>PMID:17223798</ref>
-
 
+
-
 
+
-
==Overview==
+
-
GSTs (glutathione transferases) are a multifunctional group of enzymes, widely distributed and involved in cellular detoxification processes. In the xenobiotic-degrading bacterium Ochrobactrum anthropi, GST is overexpressed in the presence of toxic concentrations of aromatic compounds such as 4-chlorophenol and atrazine. We have determined the crystal structure of the GST from O. anthropi (OaGST) in complex with GSH. Like other bacterial GSTs, OaGST belongs to the Beta class and shows a similar binding pocket for GSH. However, in contrast with the structure of Proteus mirabilis GST, GSH is not covalently bound to Cys10, but is present in the thiolate form. In our investigation of the structural basis for GSH stabilization, we have identified a conserved network of hydrogen-bond interactions, mediated by the presence of a structural water molecule that links Ser11 to Glu198. Partial disruption of this network, by mutagenesis of Ser11 to alanine, increases the K(m) for GSH 15-fold and decreases the catalytic efficiency 4-fold, even though Ser11 is not involved in GSH binding. Thermal- and chemical-induced unfolding studies point to a global effect of the mutation on the stability of the protein and to a central role of these residues in zippering the terminal helix of the C-terminal domain to the starting helix of the N-terminal domain.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
2NTO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Ochrobactrum_anthropi Ochrobactrum anthropi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NTO OCA].
+
</div>
 +
<div class="pdbe-citations 2nto" style="background-color:#fffaf0;"></div>
-
==Reference==
+
==See Also==
-
Role of Ser11 in the stabilization of the structure of Ochrobactrum anthropi glutathione transferase., Federici L, Masulli M, Bonivento D, Di Matteo A, Gianni S, Favaloro B, Di Ilio C, Allocati N, Biochem J. 2007 Apr 15;403(2):267-74. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17223798 17223798]
+
*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
-
[[Category: Glutathione transferase]]
+
== References ==
-
[[Category: Ochrobactrum anthropi]]
+
<references/>
-
[[Category: Single protein]]
+
__TOC__
-
[[Category: Allocati, N.]]
+
</StructureSection>
-
[[Category: Bonivento, D.]]
+
[[Category: Brucella anthropi]]
-
[[Category: Federici, L.]]
+
[[Category: Large Structures]]
-
[[Category: Matteo, A Di.]]
+
[[Category: Allocati N]]
-
[[Category: C-terminal all helical domain]]
+
[[Category: Bonivento D]]
-
[[Category: N-terminal alpha+beta domain]]
+
[[Category: Di Matteo A]]
-
[[Category: Transferase]]
+
[[Category: Federici L]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 09:53:57 2008''
+

Current revision

Structure of the Glutathione Transferase from Ochrobactrum anthropi in complex with glutathione

PDB ID 2nto

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools