This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oiw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:19, 28 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oiw.gif|left|200px]]
 
-
<!--
+
==The structure of a predicted thioesterase from Bacillus stearothermophilus==
-
The line below this paragraph, containing "STRUCTURE_2oiw", creates the "Structure Box" on the page.
+
<StructureSection load='2oiw' size='340' side='right'caption='[[2oiw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2oiw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OIW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2oiw| PDB=2oiw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oiw OCA], [https://pdbe.org/2oiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oiw RCSB], [https://www.ebi.ac.uk/pdbsum/2oiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oiw ProSAT], [https://www.topsan.org/Proteins/MCSG/2oiw TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''The structure of a predicted thioesterase from Bacillus stearothermophilus'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5KYT1_GEOKA Q5KYT1_GEOKA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OIW OCA].
+
Check<jmol>
-
[[Category: Cuff, M E.]]
+
<jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oi/2oiw_consurf.spt"</scriptWhenChecked>
-
[[Category: Li, H.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Moy, S.]]
+
</jmolCheckbox>
-
[[Category: Bacillus stearothermophilus]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oiw ConSurf].
-
[[Category: Mcsg]]
+
<div style="clear:both"></div>
-
[[Category: Midwest center for structural genomic]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Geobacillus stearothermophilus]]
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Thioesterase]]
+
[[Category: Cuff ME]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 11:00:35 2008''
+
[[Category: Joachimiak A]]
 +
[[Category: Li H]]
 +
[[Category: Moy S]]

Current revision

The structure of a predicted thioesterase from Bacillus stearothermophilus

PDB ID 2oiw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools