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1bvl

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(New page: 200px<br /> <applet load="1bvl" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bvl, resolution 2.87&Aring;" /> '''HUMANIZED ANTI-LYSO...)
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[[Image:1bvl.gif|left|200px]]<br />
 
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<applet load="1bvl" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bvl, resolution 2.87&Aring;" />
 
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'''HUMANIZED ANTI-LYSOZYME FV'''<br />
 
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==Overview==
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==HUMANIZED ANTI-LYSOZYME FV==
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We have determined the crystal structure of the Fv fragment of a humanized, anti-hen eggwhite lysozyme Ab (HuLys). This molecule is a composite of, known structures: complementarity-determining regions (CDRs) were from the, mouse anti-lysozyme Ab D1.3, heavy chain framework regions were from the, human myeloma protein NEW, and the light chain framework regions were, consensus sequences similar to the Bence Jones protein REI. HuLys, crystallized in space group P4(3)2(1)2, with two Fv molecules in the, crystallographic asymmetric unit. The structure was solved by molecular, replacement, using a composite of the parent structures as a search model., The resolution of the structure was 2.87 A, with an R factor of 22%. There, were several unanticipated structural similarities and differences between, HuLys and the mouse and human structures. The framework regions of HuLys, were as close or closer in conformation to D1.3 than to the NEW or REI, protein, despite overwhelming sequence identity with the human framework, regions. The effect was most pronounced at the CDR-framework junction, showing that the CDRs can induce structural changes in framework residues, having the net effect in HuLys of reconforming the framework into a, conformation more like D1.3. In the combining site, the grafted CDRs, retained conformational equilibria seen in D1.3, demonstrating that, humanizing can be applied to Abs that bind Ags through isomeric, equilibrium or induced fit mechanisms. In addition, HuLys showed, systematic differences from D1.3 that resembled domain rotations reported, for other Abs. However, the V(H)-V(L) interface itself was unaffected, and, the apparent movement was actually caused by rearrangements distant from, this surface.
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<StructureSection load='1bvl' size='340' side='right'caption='[[1bvl]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1bvl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BVL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BVL FirstGlance]. <br>
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1BVL is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens_and_mus_musculus Homo sapiens and mus musculus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BVL OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.87&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bvl OCA], [https://pdbe.org/1bvl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bvl RCSB], [https://www.ebi.ac.uk/pdbsum/1bvl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bvl ProSAT]</span></td></tr>
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==Reference==
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</table>
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Structural consequences of humanizing an antibody., Holmes MA, Foote J, J Immunol. 1997 Mar 1;158(5):2192-201. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9036965 9036965]
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== Evolutionary Conservation ==
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[[Category: Homo sapiens and mus musculus]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Protein complex]]
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Check<jmol>
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[[Category: Foote, J.]]
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<jmolCheckbox>
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[[Category: Holmes, M.A.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/1bvl_consurf.spt"</scriptWhenChecked>
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[[Category: anti-lysozyme]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: fv]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: humanized antibody]]
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bvl ConSurf].
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 18 09:26:58 2007''
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Foote J]]
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[[Category: Holmes MA]]

Current revision

HUMANIZED ANTI-LYSOZYME FV

PDB ID 1bvl

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